View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14361_high_6 (Length: 375)
Name: NF14361_high_6
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 37184333 - 37183976
Alignment:
| Q |
18 |
agaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctttctggcgatgaataattc |
117 |
Q |
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| T |
37184333 |
agaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctttctggcgatgaataattc |
37184234 |
T |
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| Q |
118 |
tgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccct |
217 |
Q |
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| T |
37184233 |
tgagaagcttatgaccagcttcctcaaaatctaaacacgacataatggtcagatatatagcccttcgaagattcacaagattggtatcggcttcatccct |
37184134 |
T |
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| Q |
218 |
tatctgcatatgcgtctcgccttcttcttcatctgattcaacggctgagtcgccttcctgatcaccctcaattccttcttcgtctcccaagatagttttc |
317 |
Q |
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| T |
37184133 |
tatctgcatatgcttctcgccatcttcttcatctgattcaacgactgagtcgccttcctgatcaccctcgatttcttcttcgtctcccaagatagttttc |
37184034 |
T |
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| Q |
318 |
ttcaactgctcataatgtttttcgttctctacataatctggatccagtctaaatacat |
375 |
Q |
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| T |
37184033 |
ttcaactgctcataatgtttttcgttctctacataatctggatccagtctaaatacat |
37183976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 37084947 - 37085178
Alignment:
| Q |
18 |
agaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctttctggcgatgaataattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084947 |
agaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctttctggcgatgaataattc |
37085046 |
T |
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| Q |
118 |
tgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccct |
217 |
Q |
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| T |
37085047 |
tgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccct |
37085146 |
T |
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| Q |
218 |
tatctgcatatgcgtctcgccttcttcttcat |
249 |
Q |
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| T |
37085147 |
tatctgcatctgcttctcgccatcttcttcat |
37085178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 11339206 - 11339099
Alignment:
| Q |
120 |
agaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccctta |
219 |
Q |
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|||||||||||||| |||||||||||||||| || ||||| || || | ||| |||| ||| || ||||| |||||||| || || |||||||| ||| |
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| T |
11339206 |
agaagcttatgacctgcttcctcaaaatctacactggacattattgttagatagatagtcctccgcagattgacaagattagtctctgtttcatctttta |
11339107 |
T |
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| Q |
220 |
tctgcata |
227 |
Q |
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|||||||| |
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| T |
11339106 |
tctgcata |
11339099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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