View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14361_high_8 (Length: 315)
Name: NF14361_high_8
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 8936351 - 8936051
Alignment:
| Q |
1 |
tttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttact |
100 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936351 |
tttcagcagctcttatatctacgattctgttgatccatatcaaacttaccagagaagaatagttgatactactatatatgaaaatgcagaagctcttact |
8936252 |
T |
|
| Q |
101 |
ttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgaggtatgatccggtgtatgcggatg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8936251 |
ttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatg |
8936152 |
T |
|
| Q |
201 |
cagcttcttgcatgaacaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtctcgt |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||| |||||||||||| ||| |
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| T |
8936151 |
cagctgcttgcatgaacaagtcgaattctcaaggtggccatgtttatgctattgccggggatttgaaggttagagactataaagatgatgactgtcacgt |
8936052 |
T |
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| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
8936051 |
g |
8936051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 8959872 - 8959590
Alignment:
| Q |
1 |
tttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttact |
100 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || || || |||||||||| |
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| T |
8959872 |
tttcagcagctcttatatctacgattctgttgatccatatcaaacttaccagagtagaatagttgatactactagatataaatattcaccagctcttact |
8959773 |
T |
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| Q |
101 |
ttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgaggtatgatccggtgtatgcggatg |
200 |
Q |
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| T |
8959772 |
ttgg------------------catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatg |
8959691 |
T |
|
| Q |
201 |
cagcttcttgcatgaacaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtctcgt |
300 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
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| T |
8959690 |
cagcttcttgcgtgaacaagtcgaattctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgt |
8959591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 8924710 - 8924428
Alignment:
| Q |
1 |
tttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttact |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| || || || |||||||||| |
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| T |
8924710 |
tttcagcagctcttatatcttcgattctgttgatccatatcaaacataccagagcagaatagttgatactactagatataaatattcaccagctcttact |
8924611 |
T |
|
| Q |
101 |
ttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgaggtatgatccggtgtatgcggatg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
8924610 |
ttgg------------------catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatg |
8924529 |
T |
|
| Q |
201 |
cagcttcttgcatgaacaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtctcgt |
300 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
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| T |
8924528 |
cagcttcttgcgtgaacaagtcgaattctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgt |
8924429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 277
Target Start/End: Complemental strand, 8945760 - 8945623
Alignment:
| Q |
137 |
ttccagcacgtaatttacatgaattgtagcagtcctgtgaggtatgatccggtgtatgcggatgcagcttcttgcatgaacaagtcgaattctcaaggtg |
236 |
Q |
| |
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|||||||||||| ||||||||||||| |||| |||| | | ||||||| | ||| | |||||||| ||||||||| |||||| ||||| ||||||| |
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| T |
8945760 |
ttccagcacgtagtttacatgaattgcagcaatcctatactggatgatccagcgtacgtggatgcagattcttgcat---caagtccaattcccaaggtg |
8945664 |
T |
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| Q |
237 |
gctatgtttatgccattgccggggatttgaaggttggaaac |
277 |
Q |
| |
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|| |||||||| ||||||| || ||||||||||||| |||| |
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| T |
8945663 |
gccatgtttataccattgctggagatttgaaggttgaaaac |
8945623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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