View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14361_high_9 (Length: 305)
Name: NF14361_high_9
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 18134563 - 18134424
Alignment:
| Q |
16 |
acacacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacattaaccaaatatctta |
115 |
Q |
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| T |
18134563 |
acacacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacgttaaccaaatatctta |
18134464 |
T |
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| Q |
116 |
actttctgggacaattggttcacgacataactcataacag |
155 |
Q |
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| T |
18134463 |
actttctgggatagttggttcatgacataactcataacag |
18134424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 18133750 - 18133623
Alignment:
| Q |
160 |
aaatagaaggctgagacggtccatcctctggcacgccataataactagtattataagacttaggaacacccagtagagctcgcacattcccacccattca |
259 |
Q |
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| T |
18133750 |
aaatagaaggctgagacggtccatcttctggcacgccataataattagtattataagacttgggaacacccagtagagcttgcacacgcccacccattca |
18133651 |
T |
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| Q |
260 |
atttaaacaagctcacaatggagtgtgc |
287 |
Q |
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| T |
18133650 |
atttaaacaagctcacaattgagtgtgc |
18133623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 49879979 - 49879849
Alignment:
| Q |
22 |
atacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacattaaccaaatatcttaactttc |
121 |
Q |
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| T |
49879979 |
atacagacattcaatatttcacgataacatgcatacgtaacatccaatgattaaaagaag---aaccattcatgagctttaaccaaatagctttaccttt |
49879883 |
T |
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| Q |
122 |
tgggacaattggttcacgacataactcataacag |
155 |
Q |
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| T |
49879882 |
tggaatagttggttcatgacataaatcataacag |
49879849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 46520723 - 46520631
Alignment:
| Q |
60 |
aacatccaaggattaaaagaagaaaaaccgttcacgaacattaaccaaatatcttaactttctgggacaattggttcacgacataactcataacag |
155 |
Q |
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| T |
46520723 |
aacatccaaagattaaaagaagaa---ccattcatgagctttaaccaaaaagcttaactctctgggatagttggttcatgacataactcataacag |
46520631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 46518927 - 46518872
Alignment:
| Q |
190 |
gcacgccataataactagtattataagacttaggaacacccagtagagctcgcaca |
245 |
Q |
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| T |
46518927 |
gcacaccatagtaaccagtattataggacttaggaacacccagtagagcttgcaca |
46518872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6618850 - 6618797
Alignment:
| Q |
19 |
cacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggat |
72 |
Q |
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| T |
6618850 |
cacatacatacactcaaagttttacaataacatgcatatataacatccaaggat |
6618797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6619705 - 6619755
Alignment:
| Q |
19 |
cacatacaaacattcaaagtttcccgataacatgcatatataacatccaag |
69 |
Q |
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| T |
6619705 |
cacatacaaacacttaaagttttacaataacatgcatatataacatccaag |
6619755 |
T |
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