View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14361_low_5 (Length: 486)
Name: NF14361_low_5
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 40 - 461
Target Start/End: Original strand, 22772469 - 22772889
Alignment:
| Q |
40 |
aaaatgacattaagaaaacatagatagcatcacaacatccttgattctttttagaaataatgctctatttgataaataggaccacttgaaccgagaatga |
139 |
Q |
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| T |
22772469 |
aaaatgacattaagaaaacatagatagcatcacaacatccttaattatttt-agaaataatgctaaatttgataaacaggaccacttgaaccgagaatga |
22772567 |
T |
|
| Q |
140 |
ctgatgaacacagttttgtatggagaaccaacatcggaggcggctgaatgtagattatcttattgttggcaacatctgtcacaccaaacttaactaatgt |
239 |
Q |
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| T |
22772568 |
ccgatgaacacagttttgtatggagaaccaacatcggaggcggccgaatgtagattatcttattgttggcaacatctgtcacaccaaacttaactaatgt |
22772667 |
T |
|
| Q |
240 |
accttcactgaacttatgtgcctggaaaatattgatccactgcccataaataatgcatgacacatccttatcgccactgaatttcgaccaacatttccag |
339 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22772668 |
accttcattaaacttatgtgcctggaaaatattgatccactgcccataaataatgcatgacatgtccttatcgccactgaatttcgaccaacatttccag |
22772767 |
T |
|
| Q |
340 |
atataccccaggtaatcaacaaaagttaactctgtcttcagcaggcaatgaggattgacaaaatccaagccaagacaactcttgcttaggtttaatacaa |
439 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
22772768 |
atataccctaggtaatcaacaaaagttaactctgtcttcagcaggcaatgaggattgacaaaatccaagccaatacaactcctgcttaggtttaatacaa |
22772867 |
T |
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| Q |
440 |
tgcattcaaaatcataaaattt |
461 |
Q |
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| T |
22772868 |
tgcattcaaaatcataaaattt |
22772889 |
T |
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