View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14361_low_6 (Length: 464)
Name: NF14361_low_6
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 37801969 - 37802402
Alignment:
| Q |
14 |
aatatacgaaacaaacgattagtttttgttggtgattcgattggaaggaaccaatgggaatcacttctctgtatgctatcttctgccgttacaaacaaga |
113 |
Q |
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| T |
37801969 |
aatatacgaaacaaacgattagtttttgttggtgattcgattggaaggaaccaatgggaatcacttctctgtatgctatcttctgccgttacaaacaaga |
37802068 |
T |
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| Q |
114 |
gttctgtctatgaggttaatgggaacccaattacaaagcacacaggcttcttggcattcaagtttgaagatttcaactgcactgttgaatactacaggtc |
213 |
Q |
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| T |
37802069 |
gttctgtctatgaggttaatgggaacccaattacaaagcacacaggcttcttggcattcaagtttgaagatttcaactgcactgttgaatactacaggtc |
37802168 |
T |
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| Q |
214 |
tccatttttagtagtgcagggacggcctcctcatggggcaccttaccgggtaaaattgactttgagggttgatcatatggactggacttctcataggtgg |
313 |
Q |
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| T |
37802169 |
tccatttttagtagtgcagggacggcctcctcatggggcaccttaccgggtaaaattgactttgagggttgatcatatggactggacttctcataggtgg |
37802268 |
T |
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| Q |
314 |
agagatgcagatgtgttggttctcaatgctgggcattggtggaattacgagaagaccgtcaaaatgtaaggatttcattttatgtttgtttggtgtgatg |
413 |
Q |
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| T |
37802269 |
agagatgcagatgtgttggttctcaatgctgggcattggtggaattacgagaagaccgtcaaaatgtaaggatttcattttatgtttgtttggtgtgatg |
37802368 |
T |
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| Q |
414 |
gattgttatttttaataattcaatctttaacaag |
447 |
Q |
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| T |
37802369 |
gattgttatttttaataattcaatctttaacaag |
37802402 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 7810340 - 7810486
Alignment:
| Q |
21 |
gaaacaaacgattagtttttgttggtgattcgattggaaggaaccaatgggaatcacttctctgtatgctatcttctgccgttacaaacaagagttctgt |
120 |
Q |
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| T |
7810340 |
gaaacaaacgcatagtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctgaagttcctaacaaggaatcaat |
7810439 |
T |
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| Q |
121 |
ctatgaggttaatgggaacccaattacaaagcacacaggcttcttgg |
167 |
Q |
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| T |
7810440 |
ctatgaagtaaatggtagtccaattacaaagcacaaagggttcttgg |
7810486 |
T |
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