View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14361_low_8 (Length: 317)
Name: NF14361_low_8
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 45548413 - 45548718
Alignment:
| Q |
4 |
atgtcgataaatcattttataagaactgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactcttctttc |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548413 |
atgtcgataaatcattttataagaaatgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactcttctttc |
45548512 |
T |
|
| Q |
104 |
taatgaaaacttgctgttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaat-acataaaaaacttccatagtatggttgtc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
45548513 |
taatgaaaacttgctgttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaataacataaaaaactttcatagtatggttgtc |
45548612 |
T |
|
| Q |
203 |
atattcaatcagcgctccttgaatgtgcaatattctttggcgatctcatccagaagtatactaaggatatgcttttctgtatcccttataacatcatatt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548613 |
atattcaatcagcgctccttgaatgtgcaatattctttggcgatctcatccagaagtatactaaggatatgcttttctgtatcccttataacatcatatt |
45548712 |
T |
|
| Q |
303 |
cttcga |
308 |
Q |
| |
|
||||| |
|
|
| T |
45548713 |
tttcga |
45548718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University