View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14362_high_2 (Length: 328)
Name: NF14362_high_2
Description: NF14362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14362_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 37444331 - 37444033
Alignment:
| Q |
12 |
gacttcaagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcag |
111 |
Q |
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| T |
37444331 |
gacttcaagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcag |
37444232 |
T |
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| Q |
112 |
cgagggtttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtag |
211 |
Q |
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| T |
37444231 |
tgagggtttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtag |
37444132 |
T |
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| Q |
212 |
agtgagtgaaaccaattttgaaccaaaattataagctatttttggaaagcttactgaaataagtagaaaatgtatcaatatgtgtgtatttgaacactaa |
311 |
Q |
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| T |
37444131 |
agtgagtgaaaccaattttgaaccaaaattataagctatttttggaaagcttac------------------tatcaatatgtgtgtatttgaacactaa |
37444050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 294
Target Start/End: Original strand, 7492522 - 7492676
Alignment:
| Q |
141 |
acattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaaccaaaat |
240 |
Q |
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|||||||||| |||| | || |||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||| |||| |
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| T |
7492522 |
acattgacttggctaagatagctgttgttaaaaggaggattgagtgagcaatggtgcaaaagagaggata----gaatgaaaccaattttgaacctaaat |
7492617 |
T |
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| Q |
241 |
tataagcta-----tttttggaaagcttactgaaataagtagaaaatgtatcaatatgt |
294 |
Q |
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| T |
7492618 |
tataggctagtagtattttggaaagcttattgaattaagtagaaaaattatcaatatgt |
7492676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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