View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14362_high_3 (Length: 316)
Name: NF14362_high_3
Description: NF14362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14362_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 29326722 - 29326421
Alignment:
| Q |
1 |
attatgacatcaaatttggaattggataacattatgacagtagctacaatacaagcaactattagatgcagttcatatataaaaatccatgaaaatgatc |
100 |
Q |
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| T |
29326722 |
attatgacatcaaatttggaattggatagcattatga--gtagctacaatacaagcaactattagatgcagttcatatataaaaatccatgaaaatgatc |
29326625 |
T |
|
| Q |
101 |
attataaaatgcttagataacttgttatataatttctaataactagaatttgatgaacattttactaaatttggtgctcaaaatattcgacctgcttgca |
200 |
Q |
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| T |
29326624 |
attataaaatgcttagataacttgttatataatttctaataactagaatttgatgaacattttactaaatttggtgctcaaaatattcgacatgcttgca |
29326525 |
T |
|
| Q |
201 |
acatataagacatagattataatattacagacgctcaacccatcatattaacacataacattgtttctcaatatttacttataattttgaaatatgtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29326524 |
acatataagacatagattataatattacagacgctcaacccatcatattaacacataacattgtttctcaatatttacttataattttgaaatatgtgaa |
29326425 |
T |
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| Q |
301 |
tatt |
304 |
Q |
| |
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|||| |
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| T |
29326424 |
tatt |
29326421 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 5828937 - 5828884
Alignment:
| Q |
70 |
agttcatatataaaaatccatgaaaatgatcattataaaatgcttagataactt |
123 |
Q |
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| T |
5828937 |
agttgatatataaaaattcatgaaaatgatgcttataaaatgattacataactt |
5828884 |
T |
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