View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14362_low_1 (Length: 350)
Name: NF14362_low_1
Description: NF14362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14362_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 12602907 - 12603036
Alignment:
| Q |
210 |
acttaatgatacaagtatgtcatgttcacataataatagtatgtatttatttgtgccaggaactagtgcattcaatcttccatgagtgatcaatccgcat |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12602907 |
acttaatgatataagtatgtcatgttcacacaataatagtatgtatttatttgtgccaggaactagtgcattcaatcttccatgagtgatcaatccgcat |
12603006 |
T |
|
| Q |
310 |
ctagctcctctgaccctcgcttcatttctg |
339 |
Q |
| |
|
|||||||||||||||||| || |||||||| |
|
|
| T |
12603007 |
ctagctcctctgaccctccctccatttctg |
12603036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 17461764 - 17461634
Alignment:
| Q |
210 |
acttaatgatacaagtatgtcatgttcacataataatag-tatgtatttatttgtgccaggaactagtgcattcaatcttccatgagtgatcaatccgca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461764 |
acttaatgatacaagtatgtcatgttcacacaataataactatgtatttgtttgtgtcaggaactagtgcattcaatcttccatgagtgatcaatccgca |
17461665 |
T |
|
| Q |
309 |
tctagctcctctgaccctcgcttcatttctg |
339 |
Q |
| |
|
||||||||||||||||||| || |||||||| |
|
|
| T |
17461664 |
tctagctcctctgaccctccctccatttctg |
17461634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 211 - 338
Target Start/End: Original strand, 14515696 - 14515824
Alignment:
| Q |
211 |
cttaatgatacaagtatgtcatgttcacataataatag-tatgtatttatttgtgccaggaactagtgcattcaatcttccatgagtgatcaatccgcat |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14515696 |
cttaatgatacaagtatatcatgttcacacaataataactatgtatttgtttgtgtcaggaattagtgcattcaatcttccatgagtgatcaatccgcat |
14515795 |
T |
|
| Q |
310 |
ctagctcctctgaccctcgcttcatttct |
338 |
Q |
| |
|
|||||||||||||||||| || ||||||| |
|
|
| T |
14515796 |
ctagctcctctgaccctccctccatttct |
14515824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 14488030 - 14488144
Alignment:
| Q |
226 |
atgtcatgttcacataataatag-tatgtatttatttgtgccaggaactagtgcattcaatcttccatgagtgatcaatccgcatctagctcctctgacc |
324 |
Q |
| |
|
||||||||| |||| ||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14488030 |
atgtcatgtacacacaataataactatatatttgtttgtgtcaggaactagtgcattcaatcttccatgagtgatcaatccacatctagctcctctgacc |
14488129 |
T |
|
| Q |
325 |
ctcgcttcatttctg |
339 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
14488130 |
ctccctccatttctg |
14488144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University