View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14362_low_2 (Length: 342)
Name: NF14362_low_2
Description: NF14362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14362_low_2 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 8405 - 8105
Alignment:
| Q |
19 |
gatcaagagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttct |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405 |
gatcatgagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttct |
8306 |
T |
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| Q |
119 |
gtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8305 |
gtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatg |
8206 |
T |
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| Q |
219 |
tgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgt--gtgtatttacttttgtctttctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8205 |
tgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgtgtgtgtatttacttttgtctttctgt |
8106 |
T |
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| Q |
317 |
g |
317 |
Q |
| |
|
| |
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| T |
8105 |
g |
8105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 354 - 592
Alignment:
| Q |
40 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
354 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
453 |
T |
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| Q |
140 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
239 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
454 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
553 |
T |
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| Q |
240 |
ctgcttctatgtatccaatccctgacgaggtatatatat |
278 |
Q |
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| T |
554 |
ctgcttctaaatatccaatccctgacgaggtatatatat |
592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 31315292 - 31315592
Alignment:
| Q |
19 |
gatcaagagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttct |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315292 |
gatcatgagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttct |
31315391 |
T |
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| Q |
119 |
gtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31315392 |
gtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatg |
31315491 |
T |
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| Q |
219 |
tgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatata--tgtgtgtgtatttacttttgtctttctgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31315492 |
tgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgtgtgtgtatttacttttgtctttctgt |
31315591 |
T |
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| Q |
317 |
g |
317 |
Q |
| |
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| |
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| T |
31315592 |
g |
31315592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 31330442 - 31330680
Alignment:
| Q |
40 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
31330442 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
31330541 |
T |
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| Q |
140 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
239 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31330542 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
31330641 |
T |
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| Q |
240 |
ctgcttctatgtatccaatccctgacgaggtatatatat |
278 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
31330642 |
ctgcttctaaatatccaatccctgacgaggtatatatat |
31330680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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