View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_high_16 (Length: 407)
Name: NF14363_high_16
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 29234442 - 29234822
Alignment:
| Q |
11 |
caaaggtattaacatgataataaaacatgtattgataaacaattgaaggaccaaacttttaacacaaaatgttgtgagtgagtaccagcagcggtgcttt |
110 |
Q |
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| T |
29234442 |
caaaggtattaacatgataataaaacatgtattgataaacaattgaaggaccaaacttttaacacaaaatgttgtgagtgagtaccagcagtggtgcttt |
29234541 |
T |
|
| Q |
111 |
ggtagagggtttcctcagagaggataactccactaagatactgaaggacaccaggggcggtgaaaaggagttcaaggagagtacgtctgttggattcaac |
210 |
Q |
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| T |
29234542 |
ggtagagggtttcctcagagaggattactccactaagatactgaaggacaccaggggcggtgaaaaggagttcacggagagcacgtctgttggattcaac |
29234641 |
T |
|
| Q |
211 |
attctcaatgccgatgctagctagacgctttccaattgttccggttgactcatcagcagcaagaataccttttccaggtgtgccgatgtatgcagcattg |
310 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29234642 |
attctcaacgccgatgctagctaggcgctttccaattgttccggttgactcatcagcagcaagaataccttttccaggtgtgccgatgtatgcagcattg |
29234741 |
T |
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| Q |
311 |
gcaataagctcatctgcaaattcttacaaacatcagtaccaacataaatataaaccttacaacaacaattataatcaataa |
391 |
Q |
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| T |
29234742 |
gcaataagctcatctgcaaattcttacaaacatcagtaccaacataaatataaaccttacaacaacaattataatgaataa |
29234822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 91 - 375
Target Start/End: Original strand, 29238379 - 29238663
Alignment:
| Q |
91 |
agtaccagcagcggtgctttggtagagggtttcctcagagaggataactccactaagatactgaaggacaccaggggcggtgaaaaggagttcaaggaga |
190 |
Q |
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| T |
29238379 |
agtacctgcagcggtgctttggtaaagggtttcctcaaagaggatgactccactaaggtactgaaggacaccaggggcggtgaaaaggagttcacggaga |
29238478 |
T |
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| Q |
191 |
gtacgtctgttggattcaacattctcaatgccgatgctagctagacgctttccaattgttccggttgactcatcagcagcaagaataccttttccaggtg |
290 |
Q |
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| |||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29238479 |
gcacgtctgttggattcaacattctcaacgctgatgctagatagacgctttccaattgtcccggttgactcatcagcagcaagaataccttttccaggtg |
29238578 |
T |
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| Q |
291 |
tgccgatgtatgcagcattggcaataagctcatctgcaaattcttacaaacatcagtaccaacataaatataaaccttacaacaa |
375 |
Q |
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| T |
29238579 |
tgccgatgtaggcggcattggcgataagctcatctgcaaattctcacaaacatcagtaccaacaaaactataaaccttacaacaa |
29238663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 331
Target Start/End: Original strand, 26630825 - 26630996
Alignment:
| Q |
160 |
accaggggcggtgaaaaggagttcaaggagagtacgtctgttggattcaacattctcaatgccgatgctagctagacgctttccaattgttccggttgac |
259 |
Q |
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||||||||| ||||| |||||||| | |||||||||||||| | |||||||||||| | | |||||| || | ||||| || ||||| || || || |
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| T |
26630825 |
accaggggcagtgaacaggagttcgcgaagagtacgtctgtttgcttcaacattctcgacgttgatgctggcgaatcgcttgccgattgtgccagtagat |
26630924 |
T |
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| Q |
260 |
tcatcagcagcaagaataccttttccaggtgtgccgatgtatgcagcattggcaataagctcatctgcaaat |
331 |
Q |
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|||||||||||||| ||||| |||||||| | ||| ||||| |||||||||||||| || |||||||||||| |
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| T |
26630925 |
tcatcagcagcaaggataccctttccaggagagccaatgtaagcagcattggcaatgagttcatctgcaaat |
26630996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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