View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_high_19 (Length: 359)
Name: NF14363_high_19
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 49446053 - 49445731
Alignment:
| Q |
19 |
acatcatataggtttcagatctgaggattctattacatatcaagagcgtaatagctcaagcttaagtttaagcaagttgaccagagcaaatatggtttgc |
118 |
Q |
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| T |
49446053 |
acatcatataggtttcagatctgaggattctattacatatcaagagcgtaatagctcaagcttaagtttaagcaagttgaccagagcaaatatggtttgc |
49445954 |
T |
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| Q |
119 |
ttttattgtgattttccgttgaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatgaatatgttgctaagtaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
49445953 |
ttttattgtgattttccgttgaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatgaatatgttgctacggaa |
49445854 |
T |
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| Q |
219 |
aaacactaatcgaaaggagatgaaaaacctgattggtgtgtattttcgattatgccttgttttgataattttcccttatttctgagtgtttgtctttcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49445853 |
aaacactaatcgaaaggagatgaaaaacctgattggtgtgtattttcgattatgccttgttttggtaattttcccttatttctgagtgtttgtctttcta |
49445754 |
T |
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| Q |
319 |
cattgttgtttagatgtatcgcc |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
49445753 |
cattgttgtttagatgtatcgcc |
49445731 |
T |
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