View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_high_20 (Length: 359)
Name: NF14363_high_20
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 1716632 - 1716289
Alignment:
| Q |
11 |
tattcttcaaaaagctcaaatctttgttaagaaactgagaatgagaatgtgaaaaatggttgctttgaaaactttgagccaaattttgagtagaaaaata |
110 |
Q |
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| T |
1716632 |
tattcttcaaaaagctcaaatctttgttaagaaactgagaatgagaatgtgaaaaatggttgctttgaaaactttgagccaaattttgagtagaaaaata |
1716533 |
T |
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| Q |
111 |
gtagcttcacagtaacattgttgtaactaatttgtgacggcctaggtatattttgttttgtcgtttgttggtattgctgtcattgaggtgaaaaacggcc |
210 |
Q |
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| T |
1716532 |
gtagcttcacagaaacattgttgtaactaatttgtgacggcctaggtatattttgttttgtcgtttgttggtattgctatcattgaggtgaaaaacggcc |
1716433 |
T |
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| Q |
211 |
agtactgtactaacattgtttgttcttgcaaatataacccttaaattgtaattactctatttatattttgctacaagattatttatcatagtcaatagtc |
310 |
Q |
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| T |
1716432 |
agtactgtactaacattgtttgttcttccaaatataacccttaaattgtaattactctatttatattttgctacaagattatttatcatagtcaatagtc |
1716333 |
T |
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| Q |
311 |
atgttatacagacaaggacaaaagttgaacaatcgaatagactc |
354 |
Q |
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| T |
1716332 |
atgttatacagacaaggacaaaagttgaacaatcgaatagactc |
1716289 |
T |
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