View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_high_28 (Length: 316)

Name: NF14363_high_28
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_high_28
NF14363_high_28
[»] chr4 (1 HSPs)
chr4 (9-301)||(53675331-53675625)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 53675331 - 53675625
Alignment:
Q  9 agcacagatataacatatgcttttgcttgcctaagttgtgattgtcttcttctcactgatacacgtttcttcatattctctgctactgaaaattgaacaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53675331 agcacagatataacatatgcttttgcttgcctaagttgtgattgtcttcttctcactgatacacgtttcttcatattctctgctactgaaaattgaacaa 53675430  T
Q  109 attttcaggctattaaaagaacactaataattcacagtatgaaaaaacggttgaataaattgtacatgttaaaat--nnnnnnnnntagtgactaaccaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||    
T  53675431 attttcaggctattaaaagaacactaataattcacagtatgaaaaaacggttgaataaattgtacatgttaaaataaaaaaaaaaacagtgactaaccaa 53675530  T
Q  207 gaacatgcacagcaacaatggtatcatttggattagctaaaactcttattgcccatgatagaagttccttgctatcatttggatccaaagagagt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53675531 gaacatgcacagcaacaatggtatcatttggattagctaaaactcttattgcccatgatagaagttccttgctatcatttgggtccaaagagagt 53675625  T

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