View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_high_3 (Length: 664)

Name: NF14363_high_3
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_high_3
NF14363_high_3
[»] chr7 (13 HSPs)
chr7 (397-658)||(20944563-20944824)
chr7 (61-222)||(20944227-20944388)
chr7 (484-643)||(134002-134161)
chr7 (470-658)||(38596896-38597084)
chr7 (52-218)||(13402647-13402813)
chr7 (46-175)||(20917266-20917395)
chr7 (471-658)||(11476117-11476304)
chr7 (52-171)||(20929604-20929725)
chr7 (105-186)||(20917405-20917491)
chr7 (507-604)||(47798266-47798363)
chr7 (99-175)||(20944359-20944441)
chr7 (162-218)||(20929739-20929795)
chr7 (102-175)||(20929773-20929852)
[»] chr2 (2 HSPs)
chr2 (470-658)||(45092150-45092338)
chr2 (481-604)||(29537165-29537287)
[»] chr6 (2 HSPs)
chr6 (470-658)||(26482712-26482900)
chr6 (493-604)||(8362976-8363087)
[»] chr4 (1 HSPs)
chr4 (507-631)||(10093330-10093454)
[»] chr3 (2 HSPs)
chr3 (484-607)||(40155505-40155628)
chr3 (470-658)||(21082137-21082324)
[»] chr8 (1 HSPs)
chr8 (568-658)||(1260907-1260997)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 397 - 658
Target Start/End: Original strand, 20944563 - 20944824
Alignment:
Q  397 ctaattatcatttgtctnnnnnnntatgccaattatagttacgatttnnnnnnnttatattaaattatttatttctagagaacgccgctcatctatttct 496  Q
    |||||||||||||||||       |||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  20944563 ctaattatcatttgtctaaaaaaatatgccaactatagttacgatttaaaaaaattatattaaattatttatttctagagaacgccgctcatctatttct 20944662  T
Q  497 tcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatcatttagctgagttt 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20944663 tcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatcatttagctgagttt 20944762  T
Q  597 ggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20944763 ggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 20944824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 20944227 - 20944388
Alignment:
Q  61 aacgaatccaactagtttgtcatcatccactgattcaatggtgttatggtatgttgataaagttatgatttttgtaaaaatggaataatatattttgaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20944227 aacgaatccaactagtttgtcatcatccactgattcaatggtgttatggtatgttgataaagttatgatttttgtaaaaatggaataatatattttgaat 20944326  T
Q  161 caaattaaataaaatattcctaattaacaccttggtgttatggtatgctgataaagttacga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20944327 caaattaaataaaatattcctaattaacaccttggtgttatggtatgctgataaagttacga 20944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 484 - 643
Target Start/End: Original strand, 134002 - 134161
Alignment:
Q  484 ctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatca 583  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  134002 ctcatctatttcttcattgcaactttttccgtcaaatttggttagttgtatatgattggttaggctttgtcttggttactccgcttaatatttcagatca 134101  T
Q  584 tttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgttt 643  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  134102 tttagctcagtttggttcctttggtggtttttctaaacgaaagaaagacattactcgttt 134161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 470 - 658
Target Start/End: Original strand, 38596896 - 38597084
Alignment:
Q  470 tctagagaacgccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgctt 569  Q
    ||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||| ||| |||| ||||||||||||||||||    
T  38596896 tctagaggacgcaactcatctatttcttcattgcaactttttccgtcaaatttggttagctgtatatgattgattaggctttgtcttggttactccgctt 38596995  T
Q  570 aatatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    ||||| ||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||| ||||||||    
T  38596996 aatatttcatatcattttgctcagtttggttcctttggtggtttttctaaacaaaagaaagacattattcgtttagtttggttttcttc 38597084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 13402813 - 13402647
Alignment:
Q  52 ttaaaattcaacgaatccaactagtttgtcatcatccactgattcaatggtgttatggtatgttgataaagttatgatttttgtaaaaatggaataatat 151  Q
    ||||||||||||||||||||||| ||||| |  ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||| |    
T  13402813 ttaaaattcaacgaatccaactaatttgtgactatccactgattcgttggtgttatggtatgttgataaagttatgttttttgtaaaaatgtaataatct 13402714  T
Q  152 attttgaatcaaattaaataaaatattcctaattaacaccttggtgttatggtatgctgataaagtt 218  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||| |||||||||||    
T  13402713 attttgaatcaaattaaatgaaattttcttaattaacacgttggtgttatggtatactgataaagtt 13402647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 20917266 - 20917395
Alignment:
Q  46 aaaaatttaaaattcaacgaatccaactagtttgtcatcatccactgattcaatggtgttatggtatgttgataaagttatgatttttgtaaaaatggaa 145  Q
    ||||||||||| ||||||||||||||||||||||| |  ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  20917266 aaaaatttaaatttcaacgaatccaactagtttgtgactatccactgattcattgatgttatggtatattgataaagttatgatttttgtaaaaatggaa 20917365  T
Q  146 taatatattttgaatcaaattaaataaaat 175  Q
    ||||||||||||||||||||||||||||||    
T  20917366 taatatattttgaatcaaattaaataaaat 20917395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 471 - 658
Target Start/End: Original strand, 11476117 - 11476304
Alignment:
Q  471 ctagagaacgccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgctta 570  Q
    |||||| |||||  |||| |||||||||||| |||  ||||| ||||||||||||||   |  ||||||||||||  ||  |||||||||||||||||||    
T  11476117 ctagaggacgcctttcatatatttcttcattgcaatgttttctgtcaaatttggttagccgcatatgattggttagactatgtcttggttactccgctta 11476216  T
Q  571 atatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || |||  |||| ||||||||    
T  11476217 atatttcagatcatttagctcagtttggttcctttggtggtttttctaaacgaaagaaagacattagtcatttagtttggttttcttc 11476304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 20929604 - 20929725
Alignment:
Q  52 ttaaaattcaacgaatccaactagtttgtcatcatccactgattcaatggtgttatggtatgttgataaagttatgatttttgtaaaaatggaata--at 149  Q
    ||||||||||| ||||||||||||||||| |  |||||||||| |  ||||||||||||||||||||||||||| |||||||||| ||||||||||  ||    
T  20929604 ttaaaattcaatgaatccaactagtttgtgactatccactgatccgttggtgttatggtatgttgataaagttaagatttttgtagaaatggaataatat 20929703  T
Q  150 atattttgaatcaaattaaata 171  Q
    ||||||||||||||||||||||    
T  20929704 atattttgaatcaaattaaata 20929725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 20917405 - 20917491
Alignment:
Q  105 tatggtatgttgataaagttatgatttt-----tgtaaaaatggaataatatattttgaatcaaattaaataaaatattcctaatta 186  Q
    ||||||||||||||||||||||||||||     | |||||||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  20917405 tatggtatgttgataaagttatgattttgttaatttaaaaatggaataatatattttgaatcaaattaattaaaattttcttaatta 20917491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 507 - 604
Target Start/End: Complemental strand, 47798363 - 47798266
Alignment:
Q  507 tttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatcatttagctgagtttggttcctt 604  Q
    |||||| ||||| |||||||  |||| || ||||||||| |||||||||||||||   |||||||||| |||| |||||||||| |||||||||||||    
T  47798363 tttttctgtcaactttggtttgttgtgtacgattggttaggcttcgtcttggttatgtcgcttaatatttcagttcatttagctcagtttggttcctt 47798266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 20944359 - 20944441
Alignment:
Q  99 tggtgttatggtatgttgataaagttatgatttttgt------aaaaatggaataatatattttgaatcaaattaaataaaat 175  Q
    ||||||||||||||| ||||||||||| ||||||| |      |||||||||||||||||||||||||| |||||| ||||||    
T  20944359 tggtgttatggtatgctgataaagttacgattttttttaatttaaaaatggaataatatattttgaatcgaattaattaaaat 20944441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 20929739 - 20929795
Alignment:
Q  162 aaattaaataaaatattcctaattaacaccttggtgttatggtatgctgataaagtt 218  Q
    |||||||||||||| ||| |||||||||| | | |||||||||||||||||||||||    
T  20929739 aaattaaataaaattttcttaattaacacgtggctgttatggtatgctgataaagtt 20929795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 20929773 - 20929852
Alignment:
Q  102 tgttatggtatgttgataaag-ttatgatttt-----tgtaaaaatggaataatatattttgaatcaaattaaataaaat 175  Q
    |||||||||||| |||||||| ||||||||||     | |||||| ||||||||||||||||||| ||||||| ||||||    
T  20929773 tgttatggtatgctgataaagtttatgatttttttaatttaaaaaaggaataatatattttgaattaaattaattaaaat 20929852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 470 - 658
Target Start/End: Original strand, 45092150 - 45092338
Alignment:
Q  470 tctagagaacgccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgctt 569  Q
    ||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||  ||| || ||||||||| |||| ||| ||||||||||||||    
T  45092150 tctagaggacgccgctcatctatttcttcattggaactttttctgtcaaatttggttagctgtatacgattggttaggctttgtcatggttactccgctt 45092249  T
Q  570 aatatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    || || ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||  |||| ||||||||    
T  45092250 aacatttcagatcatatagctcggtttggttcctttggtggtttttctaaacgaaagaaagacattactcgtttagtttggttttcttc 45092338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 604
Target Start/End: Complemental strand, 29537287 - 29537165
Alignment:
Q  481 ccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcaga 580  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||  | || |||||||||||| |||| || || ||| | ||  ||||||| |||||    
T  29537287 ccgctcatctatttcttcattgcaa-tttttccgtcaaatttggtttgtggtgtatgattggttaggctttgtattagttgcaccatttaatatttcaga 29537189  T
Q  581 tcatttagctgagtttggttcctt 604  Q
    ||| ||| || |||||||||||||    
T  29537188 tcacttaactcagtttggttcctt 29537165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 658
Target Start/End: Complemental strand, 26482900 - 26482712
Alignment:
Q  470 tctagagaacgccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgctt 569  Q
    ||||||| ||||||||||||||||||||| || ||| |||| |||||||||||||||  |||| |||||||| |||  |||  |||||||||| ||  ||    
T  26482900 tctagaggacgccgctcatctatttcttcgttgcaatttttaccgtcaaatttggtttgttgtgtatgattgattagactttatcttggttacgccattt 26482801  T
Q  570 aatatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    ||||| ||| ||||||||| | || ||||||| ||  |  | |||| |||||| ||||||||||  | ||||||  |||| ||||||||    
T  26482800 aatatttcatatcatttagttcaggttggttcattcagaagcttttttaaacgcaagaaagacatcactcgtttagtttggttttcttc 26482712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 604
Target Start/End: Original strand, 8362976 - 8363087
Alignment:
Q  493 ttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatcatttagctga 592  Q
    ||||||||| | | |||||| ||||| |||||||  |||| || ||||||||| | ||| |||||||||| | | ||||||| | |||||||||| || |    
T  8362976 ttcttcattgcgattttttctgtcaactttggtttgttgtgtacgattggttaggtttcatcttggttacgctgtttaatattttagatcatttacctca 8363075  T
Q  593 gtttggttcctt 604  Q
    ||||||||||||    
T  8363076 gtttggttcctt 8363087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 507 - 631
Target Start/End: Original strand, 10093330 - 10093454
Alignment:
Q  507 tttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatcatttagctgagtttggttcctttg 606  Q
    |||||| |||||||||||||  |||| |||||||||||| |||| || ||||||||  || ||| ||| ||| | ||||||||| |||||||||||||      
T  10093330 tttttcggtcaaatttggtttgttgtgtatgattggttaggctttgttttggttacgtcgtttactatttcacaccatttagctcagtttggttccttca 10093429  T
Q  607 gtggtttttctaaacgaaagaaaga 631  Q
    |  ||||||||||||| ||||||||    
T  10093430 gaagtttttctaaacgcaagaaaga 10093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 607
Target Start/End: Complemental strand, 40155628 - 40155505
Alignment:
Q  484 ctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgcttaatatatcagatca 583  Q
    ||||||| |||||||| | ||||||||| |||||||| ||| | | ||||| |||||||||| |||||||| |||||||||  |||  ||| |||||||     
T  40155628 ctcatctctttcttcactgcaacttttttcgtcaaatctggatcaatgtttctgattggttaagcttcgtcatggttactctacttcgtatttcagatcg 40155529  T
Q  584 tttagctgagtttggttcctttgg 607  Q
     |||||| |||| |||||||||||    
T  40155528 cttagctcagttcggttcctttgg 40155505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 658
Target Start/End: Original strand, 21082137 - 21082324
Alignment:
Q  470 tctagagaacgccgctcatctatttcttcattacaactttttccgtcaaatttggttaattgtttatgattggttacgcttcgtcttggttactccgctt 569  Q
    ||||||| ||||||| ||||||||| |||||| ||| |||||||||||||||||| |  |||| || ||||||||| ||||  | |||||||| |   ||    
T  21082137 tctagaggacgccgcccatctattt-ttcattgcaattttttccgtcaaatttggcttgttgtgtacgattggttaggctttattttggttacactattt 21082235  T
Q  570 aatatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    | ||| ||| | ||||||||  |||||||||||||    |||||| |||||||  |||||||||  ||||||||  |||| ||||||||    
T  21082236 actatttcacaccatttagcccagtttggttccttcataggttttactaaacgcgagaaagacataattcgtttagtttggttttcttc 21082324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 658
Target Start/End: Original strand, 1260907 - 1260997
Alignment:
Q  568 ttaatatatcagatcatttagctgagtttggttcctttggtggtttttctaaacgaaagaaagacagtattcgtttgatttgattttcttc 658  Q
    ||||||| ||| ||||||||||| | |||| ||| || || || ||||||||| | |||||| ||| |||||||||  |||||||||||||    
T  1260907 ttaatatttcatatcatttagctcaatttgattctttcggaggcttttctaaatgcaagaaaaacattattcgtttagtttgattttcttc 1260997  T

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