View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_high_36 (Length: 259)
Name: NF14363_high_36
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_high_36 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42188013 - 42188256
Alignment:
| Q |
1 |
caaccaacctcctcaagctcctattattctgctgaagtttctcgtgcccactaatcacgagcacaaacttttcagctgtcaggagctcgtttcttagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188013 |
caaccaacctcctcaagctcctattattctgctgaagtttctcgtgcccactaatcacgagcacaaacttttcagctgtcaggagctcgtttcttagctc |
42188112 |
T |
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| Q |
101 |
acgaccgagttcctgcctctcctctgacacaagggcttcatcatagtacttagctatagtagtgtctgctttacctaaaaccatctcaataaggtctatt |
200 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42188113 |
acgaccgagttcttgcctctcctctgatacaagggcttcatcatagtacttagctatagtagtgtctgctttacctaaaaccatttcaataaggtctatt |
42188212 |
T |
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| Q |
201 |
gtactttgaaagaaaggccattctttgtacattgcttttagttc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188213 |
gtactttgaaagaaaggccattctttgtacattgcttttagttc |
42188256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 341044 - 340823
Alignment:
| Q |
20 |
cctattattctgctgaagtttctcgtgcccactaatcacgagcacaaacttttcagctgtcaggagctcgtttcttagctcacgaccgagttcctgcctc |
119 |
Q |
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||||||||||||| ||||||| |||||||||| ||| || |||||||| |||| ||| | ||||||||| ||||||| || ||| ||||| || ||| |
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| T |
341044 |
cctattattctgcagaagtttgtcgtgcccacaaataactgttacaaacttctcagttgtaatgagctcgttccttagctgacaaccaagttcttgtctc |
340945 |
T |
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| Q |
120 |
tcctctgacacaagggcttcatcatagtacttagctatagtagtgtctgctttacctaaaaccatctcaataaggtctattgtactttgaaagaaaggcc |
219 |
Q |
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| T |
340944 |
ttctctgaaacaagtgcctcatcatactgctttgcaatagaaatgtcggcttttcccaaaaccatctcaatcaggtctattatgctttgaaagaaaggcc |
340845 |
T |
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| Q |
220 |
attctttgtacattgcttttag |
241 |
Q |
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| T |
340844 |
actctttgtacatggcttttag |
340823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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