View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_high_37 (Length: 245)
Name: NF14363_high_37
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 47960619 - 47960747
Alignment:
| Q |
102 |
gtcaaagatgacattatttttacatctttatcattttcaatcaatgttcatatattttagattaggtacgtatcaaattatttttaaaaccaaataggtg |
201 |
Q |
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| T |
47960619 |
gtcaaagatgacattatttttacatctttatcattttcaa----tgttcatacattttagattaggtacgtaacagattatttttaaaaccaaataggtg |
47960714 |
T |
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| Q |
202 |
tgtgtattcttataattttaatgaaatttatga |
234 |
Q |
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| T |
47960715 |
tgtgtattcttaaaattttaatgaaatttatga |
47960747 |
T |
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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 10756339 - 10756212
Alignment:
| Q |
102 |
gtcaaagatgacattatttttacatctttatcattttcaatcaatgttcatatattttagattaggtacgtatcaaattatttttaaaaccaaataggtg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
10756339 |
gtcaaagatgacattatttttacatctttatcattttcaat----gttcatacattttagattaggtacgtaacagattatttttagaaccaaataggtg |
10756244 |
T |
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| Q |
202 |
tgtgtattcttataattttaatgaaatttatg |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10756243 |
tgtgtattcttataattttaatgaaatttatg |
10756212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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