View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_high_39 (Length: 239)

Name: NF14363_high_39
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_high_39
NF14363_high_39
[»] chr6 (8 HSPs)
chr6 (3-223)||(7813979-7814199)
chr6 (7-135)||(7806763-7806891)
chr6 (6-140)||(7871207-7871341)
chr6 (7-100)||(3255904-3255997)
chr6 (10-113)||(15398186-15398289)
chr6 (10-113)||(15409973-15410076)
chr6 (43-85)||(23951631-23951673)
chr6 (10-78)||(7859923-7859991)
[»] chr1 (1 HSPs)
chr1 (12-113)||(37997614-37997715)
[»] chr7 (1 HSPs)
chr7 (9-133)||(19317660-19317784)
[»] chr3 (1 HSPs)
chr3 (12-113)||(2468301-2468402)
[»] chr5 (2 HSPs)
chr5 (18-83)||(24005995-24006060)
chr5 (27-84)||(23941162-23941219)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 7813979 - 7814199
Alignment:
Q  3 atgatggtggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7813979 atgatggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttcca 7814078  T
Q  103 agcgatggaccgggatctgctattcactccctgctctccactttgaattttgtttggagaactgcggtctatctgagcaacaggtggaagacaccttcta 202  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  7814079 agcgatggaccggactctgctattcactccctgctctccactttgaatttcgtttgaagaactgcggtctatctaagcaacaggtggaagacaccttcta 7814178  T
Q  203 tcgcttcagccattttgtaga 223  Q
    |||||||||||||||||||||    
T  7814179 tcgcttcagccattttgtaga 7814199  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 7806891 - 7806763
Alignment:
Q  7 tggtggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcg 106  Q
    |||| |||||||| || |||||||| ||||||||||||  | |||||||||||||||||| ||| ||||| |||||  ||||  |  | |||||||||||    
T  7806891 tggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaactggcttttactacgtccattctttccaagcg 7806792  T
Q  107 atggaccgggatctgctattcactccctg 135  Q
     |||||||   ||||||||||||||||||    
T  7806791 gtggaccgcactctgctattcactccctg 7806763  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 7871207 - 7871341
Alignment:
Q  6 atggtggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagc 105  Q
    |||||||| ||||||||   |||||| ||||||||  ||||| ||||||||||||| |||||||| |||||||||||| |||||||  | |||||||| |    
T  7871207 atggtggacagaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaac 7871306  T
Q  106 gatggaccgggatctgctattcactccctgctctc 140  Q
    | |||| |    | |||||||||||||||| ||||    
T  7871307 ggtggatcccactatgctattcactccctgttctc 7871341  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 3255997 - 3255904
Alignment:
Q  7 tggtggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttc 100  Q
    |||| ||||||||||| |||||||||||||||||| ||   |||||||| | |||||||||||| |||||| ||||| ||||||| || |||||    
T  3255997 tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc 3255904  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 15398186 - 15398289
Alignment:
Q  10 tggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcgatg 109  Q
    |||||||||||||||  ||||| ||||||||| ||| |||||| ||||||||||||||||| ||| | |||||  |||||||  | ||||| ||||| ||    
T  15398186 tggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtg 15398285  T
Q  110 gacc 113  Q
    ||||    
T  15398286 gacc 15398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 15409973 - 15410076
Alignment:
Q  10 tggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcgatg 109  Q
    |||||||||||||||  ||||| ||||||||| ||| |||||| ||||||||||||||||| ||| | |||||  |||||||  | ||||| ||||| ||    
T  15409973 tggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtg 15410072  T
Q  110 gacc 113  Q
    ||||    
T  15410073 gacc 15410076  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 23951631 - 23951673
Alignment:
Q  43 tgtctcacattctctcttttctcccaactaaactcgctttctc 85  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||    
T  23951631 tgtctcatattctctcttttctcccaaccaaacttgctttctc 23951673  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7859923 - 7859991
Alignment:
Q  10 tggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcg 78  Q
    |||||||||||| | ||||||| |  |||||| ||| |||||| ||||||||||| ||||| |||||||    
T  7859923 tggatagaatcaacaatttaccagtcgagttattgtgtcacatcctctcttttcttccaacaaaactcg 7859991  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 37997715 - 37997614
Alignment:
Q  12 gatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcgatgga 111  Q
    |||||||||||||||||||| ||||||||| ||| | |||| ||||||||||| ||||  |||||||||||  |||||||||| ||||| ||||| ||||    
T  37997715 gatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaactgttctttcaaagcggtgga 37997616  T
Q  112 cc 113  Q
    ||    
T  37997615 cc 37997614  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 19317784 - 19317660
Alignment:
Q  9 gtggatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcgat 108  Q
    ||||||||||| ||||||||||| ||||||||| ||  | |||||||||||||||||||||| ||||| |||||  ||||| |  | ||||||||||| |    
T  19317784 gtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactacagccattctttccaagcgtt 19317685  T
Q  109 ggaccgggatctgctattcactccc 133  Q
    |||||    ||||||||||||||||    
T  19317684 ggacccaactctgctattcactccc 19317660  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 2468402 - 2468301
Alignment:
Q  12 gatagaatcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttctctacaactgtactttccaagcgatgga 111  Q
    |||||||| ||||||||| ||||||||||| ||||||||||| |||||||||| || |  ||||  |||||| || |||| || ||||| ||||| ||||    
T  2468402 gatagaataagcgatttaacggatgagttattgtctcacattttctcttttcttcccatcaaacaagctttcactgcaacagttctttcaaagcgttgga 2468303  T
Q  112 cc 113  Q
    ||    
T  2468302 cc 2468301  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 24006060 - 24005995
Alignment:
Q  18 atcagcgatttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttc 83  Q
    |||||| | ||||| ||||||||||| | |||||||||||||||||| ||||| ||||| ||||||    
T  24006060 atcagcaacttacctgatgagttactttgtcacattctctcttttcttccaaccaaacttgctttc 24005995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 23941219 - 23941162
Alignment:
Q  27 ttaccggatgagttactgtctcacattctctcttttctcccaactaaactcgctttct 84  Q
    ||||| ||||||||||| | |||||||||||||||||| ||||| || || |||||||    
T  23941219 ttacctgatgagttactttgtcacattctctcttttcttccaaccaagcttgctttct 23941162  T

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