View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_high_8 (Length: 504)

Name: NF14363_high_8
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_high_8
NF14363_high_8
[»] chr8 (4 HSPs)
chr8 (8-486)||(9460795-9461276)
chr8 (9-40)||(12002333-12002364)
chr8 (1-54)||(31265055-31265108)
chr8 (1-57)||(37564324-37564380)
[»] chr6 (1 HSPs)
chr6 (9-60)||(31702729-31702780)
[»] chr2 (3 HSPs)
chr2 (1-52)||(40347944-40347995)
chr2 (7-40)||(9049159-9049192)
chr2 (7-40)||(18043904-18043937)
[»] chr1 (3 HSPs)
chr1 (9-40)||(32787264-32787295)
chr1 (9-70)||(46533743-46533804)
chr1 (11-51)||(40286926-40286966)
[»] chr5 (1 HSPs)
chr5 (9-54)||(14474995-14475040)
[»] chr4 (2 HSPs)
chr4 (1-54)||(2063533-2063586)
chr4 (1-57)||(24546700-24546756)
[»] chr3 (1 HSPs)
chr3 (9-57)||(37745047-37745095)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 9460795 - 9461276
Alignment:
Q  8 aattacacaaatttttataaaaagttactattttaaggtcttaaagaatgtccttgagacactcattgttatttnnnnnnnnnnnn-cagtggtatgcca 106  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||             ||||||  |||||    
T  9460795 aattagacaaacttttataaaaagttactattttaaagtcttaaagaatgtctctgagacactcgttgttatttaaaaaaaaaaaaacagtggcgtgcca 9460894  T
Q  107 aattattagtaaaaaatagtgccaaattaaacatcaaccatat--atttagtcacagataagagacatgttcttaattacgtaaactaaagccaacagaa 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9460895 aattatttgtaaaaaatagtgccaaattaaacatcaaccatatatatttagtcacagataacagacatgttcttaattacgtaaactaaagccaacagaa 9460994  T
Q  205 acaacatgaacacacaaattacaaaatcacatggttcaattctttggtcatatgagacacaaagaaaacctaagtatttaatctcatacgtatcataaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9460995 acaacatgaacacacaaattacaaaatcacatggttcaattctttggtcatatgagacacaaagaaaacctaagtatttaatctcatacgtatcataaat 9461094  T
Q  305 aaatatacatgtccagataacagtgacactcccatggctcaacactagctagtacctgcaacaaaccagaaaggttaatccaaataaacccaaaaatttc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9461095 aaatatacatgtccagataacagtgacactcccatggctcaacactagctagtacctgcaacaaaccagaaaggttaatccaaataaacccaaaaatttc 9461194  T
Q  405 ataatatatgatgccaattaaaataaaactattcatataaatatcaagagtttaaattaagtgtctatagattggttagcac 486  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9461195 ataatatatgatgctaattaaaataaaactattcatataaatatcaagagtttaaattaagtgtctatagattggttagcac 9461276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 12002333 - 12002364
Alignment:
Q  9 attacacaaatttttataaaaagttactattt 40  Q
    ||||||||||||||||||||||||||||||||    
T  12002333 attacacaaatttttataaaaagttactattt 12002364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31265055 - 31265108
Alignment:
Q  1 atgtactaattacacaaatttttataaaaagttactattttaaggtcttaaaga 54  Q
    ||||| ||| ||||||| |||| ||||||||||||||||||| | |||||||||    
T  31265055 atgtattaaatacacaagttttcataaaaagttactattttaggctcttaaaga 31265108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37564380 - 37564324
Alignment:
Q  1 atgtactaattacacaaatttttataaaaagttactattttaaggtcttaaagaatg 57  Q
    ||||| ||| ||||||| |||| |||||| ||||||||| |||| ||||||||||||    
T  37564380 atgtattaaatacacaagttttcataaaaggttactattctaagctcttaaagaatg 37564324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 31702780 - 31702729
Alignment:
Q  9 attacacaaatttttataaaaagttactattttaaggtcttaaagaatgtcc 60  Q
    |||||||| ||||||||||||||||||||||| | | ||||||||| |||||    
T  31702780 attacacatatttttataaaaagttactatttaaggatcttaaagagtgtcc 31702729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40347995 - 40347944
Alignment:
Q  1 atgtactaattacacaaatttttataaaaagttactattttaaggtcttaaa 52  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||| |||||||    
T  40347995 atgtattaaatacacaaattttcataaaaaattactattttaagctcttaaa 40347944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 9049192 - 9049159
Alignment:
Q  7 taattacacaaatttttataaaaagttactattt 40  Q
    |||||||||||||||||||||||||||| |||||    
T  9049192 taattacacaaatttttataaaaagttattattt 9049159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 18043904 - 18043937
Alignment:
Q  7 taattacacaaatttttataaaaagttactattt 40  Q
    |||||||||||| |||||||||||||||||||||    
T  18043904 taattacacaaagttttataaaaagttactattt 18043937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 32787295 - 32787264
Alignment:
Q  9 attacacaaatttttataaaaagttactattt 40  Q
    ||||||||||||||||||||||||||||||||    
T  32787295 attacacaaatttttataaaaagttactattt 32787264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 46533804 - 46533743
Alignment:
Q  9 attacacaaatttttataaaaagttactattttaaggtcttaaagaatgtccttgagacact 70  Q
    ||||||||  |||||||||||| |||| ||||||| |||||| ||||| ||||| |||||||    
T  46533804 attacacatttttttataaaaaattaccattttaaagtcttatagaatatcctttagacact 46533743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 40286926 - 40286966
Alignment:
Q  11 tacacaaatttttataaaaagttactattttaaggtcttaa 51  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  40286926 tacacaaacttttataaaaagttactatttaaagttcttaa 40286966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 14475040 - 14474995
Alignment:
Q  9 attacacaaatttttataaaaagttactattttaaggtcttaaaga 54  Q
    |||||| ||||||| | ||||||||||||||| |||||||||||||    
T  14475040 attacataaattttcaaaaaaagttactatttgaaggtcttaaaga 14474995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2063533 - 2063586
Alignment:
Q  1 atgtactaattacacaaatttttataaaaagttactattttaaggtcttaaaga 54  Q
    ||||| ||| |||||||||||| |||||||||||||||| || | |||||||||    
T  2063533 atgtattaaatacacaaattttcataaaaagttactattctaggctcttaaaga 2063586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24546756 - 24546700
Alignment:
Q  1 atgtactaattacacaaatttttataaaaagttactattttaaggtcttaaagaatg 57  Q
    ||||| ||| |||||||||||| ||||||| |||||||| |||| ||||||| ||||    
T  24546756 atgtattaaatacacaaattttcataaaaaattactattctaagctcttaaaaaatg 24546700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 37745047 - 37745095
Alignment:
Q  9 attacacaaatttttataaaaagttactattttaaggtcttaaagaatg 57  Q
    |||||||||||||||  ||||| ||||||||| ||| ||||||||||||    
T  37745047 attacacaaattttttaaaaaaattactatttaaagatcttaaagaatg 37745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University