View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_1 (Length: 784)
Name: NF14363_low_1
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 671; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 17 - 759
Target Start/End: Complemental strand, 31703404 - 31702667
Alignment:
| Q |
17 |
catgaattgcaatcaaatgtttgtattgaagtgcaacttgctggtttgatttgtaagcatttgtatttatatcttctttgtcttcatcatttacactctg |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31703404 |
catgaattgcaatcaaatgtttgtattgaagtgcaacttgctggtttgatttgaaagcatttgtatttatatcttccttgtcttcatcatttacactctg |
31703305 |
T |
|
| Q |
117 |
ccatccataaaatgagaaatatttaaatacacggttatcaaatcgagattcatattgtgaatctgaaaaacttattttctaaattgcaaactgaatctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31703304 |
ccatccataaaatgagaaatatttaaatacacggttatcaaatcgagattcatattgtgaatctgaaaaacttattttctaaattgcaaactgaatctta |
31703205 |
T |
|
| Q |
217 |
ttattaatggtaaaatgcattgctaatatgagtcacatcacattgctaatatgataaccatgccataacgcaagaacaaataattcacattttgttttcc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31703204 |
ttattaatggtaaaatgcattgctaatatgagtcacatcacattgctaatatgataaccatgccataacgcaa-----aataattcacattttgttttcc |
31703110 |
T |
|
| Q |
317 |
ttttttgaagaatgaaaagatggaatatatgattccctcaccttttcttccgttttcagtttaaccatagaatcttgcaattcccatgattcatcttcag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31703109 |
ttttttgaagaatgaaaagatggaatatatgattccctcaccttttcttcagttttcagtttaaccatagaatcttgcaattcccatgattcgtcttcag |
31703010 |
T |
|
| Q |
417 |
atgattcacatccatttaacacctgattgctgacactatcagattgattatattcttttggtgatttagttgatataagtaccatatttttgagtgattc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31703009 |
atgattcacatccatttaacacctgattgctgacactatcagattgattatattcttttggtgatttagttgatataagtaccatatttttgagtgatgc |
31702910 |
T |
|
| Q |
517 |
tggcgagggaaattctgttaaacaatctgtcccaggacgataaagcatttttccaaatattttaattgctatctgcatagaaaaaatcatgatcgcgctt |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||| |
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| T |
31702909 |
tggcgagggaaattctgttaaacaatctgtcccaggacgataaagcatatttccaaatatttgaattgctatctgcatagaaaaaatcatgatcaccctt |
31702810 |
T |
|
| Q |
617 |
tagattcgtagagttgacgttttagattgaagacatgtatgttgttcgacacgtgatgatgtttaaaaatgacacatatattacattcaatcactactat |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
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| T |
31702809 |
tagattcgtagagttgacgttttagattgaagacatgtatgttgttcgacacgtgatgatgtctaacaacgacacatatattacattcaatcactactat |
31702710 |
T |
|
| Q |
717 |
tttcttaaattatcattggtgtctatatatcagtgttgtgtca |
759 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31702709 |
tttcttaaattattattggtgtctatatatcagtgttgtgtca |
31702667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 399 - 609
Target Start/End: Complemental strand, 31652850 - 31652636
Alignment:
| Q |
399 |
cccatgattcatcttcagatgattcacatccatttaacacctgattgctgacactatcagattgattatattcttttggtgatttagttgatataagtac |
498 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| ||| |||| |||||| | ||| ||||| |||| | | || ||||||| |||||||||||||||||| |
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| T |
31652850 |
cccatgtttcatcttcagacgattcacttccgtttgacacatgattgttagcacaatcagtttgaggaaactcctttggtggtttagttgatataagtac |
31652751 |
T |
|
| Q |
499 |
catatttttgagtgattctggcgagggaaattctgttaaacaatctgtcccaggacgataaagcatttttccaaatattttaattgctatctgc----at |
594 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||| | |||| |||||| || |
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| T |
31652750 |
catattttttagtgatgctggtgagggaaattctgttatacaatctgtcgtaggacaataaagcatttctccaaatatttgatttgccatctgcatgaat |
31652651 |
T |
|
| Q |
595 |
agaaaaaatcatgat |
609 |
Q |
| |
|
||||||||||||||| |
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|
| T |
31652650 |
agaaaaaatcatgat |
31652636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 631 - 769
Target Start/End: Complemental strand, 31652556 - 31652418
Alignment:
| Q |
631 |
tgacgttttagattgaagacatgtatgttgttcgacacgtgatgatgtttaaaaatgacacatatattacattcaatcactactattttcttaaattatc |
730 |
Q |
| |
|
||||| ||||||||||| ||||| || |||| |||||||||||| ||| | | || || | ||||||||||||||||||| ||||||||||||||||| |
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| T |
31652556 |
tgacgctttagattgaaaacatgcatattgtccgacacgtgatggtgtctgacaacgaaaagtatattacattcaatcacttctattttcttaaattatt |
31652457 |
T |
|
| Q |
731 |
attggtgtctatatatcagtgttgtgtcatgtatctgtg |
769 |
Q |
| |
|
|| |||| |||| | ||||||||||||| || |||||| |
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| T |
31652456 |
atcggtgactatgtgacagtgttgtgtcaggtgtctgtg |
31652418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 746
Target Start/End: Complemental strand, 28887428 - 28887381
Alignment:
| Q |
699 |
acattcaatcactactattttcttaaattatcattggtgtctatatat |
746 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||| |||| |
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|
| T |
28887428 |
acattcaatcaattctattttcttaaattattattggtgtctacatat |
28887381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 742
Target Start/End: Complemental strand, 17105304 - 17105259
Alignment:
| Q |
697 |
ttacattcaatcactactattttcttaaattatcattggtgtctat |
742 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
17105304 |
ttacattcaatcacttttattttcttaaattattattagtgtctat |
17105259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 753
Target Start/End: Complemental strand, 29236300 - 29236244
Alignment:
| Q |
697 |
ttacattcaatcactactattttcttaaattatcattggtgtctatatatcagtgtt |
753 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||| ||||||| |||| |||||| |
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|
| T |
29236300 |
ttacattcaatcacttctattttctcaaattattattagtgtctacatataagtgtt |
29236244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 729
Target Start/End: Complemental strand, 10338652 - 10338619
Alignment:
| Q |
696 |
attacattcaatcactactattttcttaaattat |
729 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
10338652 |
attacattcaatcacttctattttcttaaattat |
10338619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Complemental strand, 12170632 - 12170590
Alignment:
| Q |
700 |
cattcaatcactactattttcttaaattatcattggtgtctat |
742 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
12170632 |
cattcaatcacttttattttcttaaattattattggtgtctat |
12170590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Complemental strand, 12415060 - 12415018
Alignment:
| Q |
700 |
cattcaatcactactattttcttaaattatcattggtgtctat |
742 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
12415060 |
cattcaatcacttttattttcttaaattattattggtgtctat |
12415018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 729
Target Start/End: Original strand, 28735820 - 28735862
Alignment:
| Q |
688 |
acacatata-ttacattcaatcactactattttcttaaattat |
729 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
28735820 |
acacatataattacattcaatcacttctattttcttaaattat |
28735862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 3536247 - 3536180
Alignment:
| Q |
149 |
ggttatcaaatcgagattcatattgtgaatctgaaaaacttattttctaaattgcaaactgaatcttattat |
220 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || ||||||||||||| ||||| || ||||||||||||| |
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|
| T |
3536247 |
ggttatcaaatcgagatttaaattgtgaatatg-aaaacttattttccaaatt---aattgaatcttattat |
3536180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 758
Target Start/End: Original strand, 16047687 - 16047747
Alignment:
| Q |
697 |
ttacattcaatcactactattttcttaaattatcattggtgtctatatatcagtgttgtgtc |
758 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| ||||||||| | || |||||||| |||| |
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|
| T |
16047687 |
ttacattcaatcacttctattt-cttaaattattattggtgtccacatgtcagtgttctgtc |
16047747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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