View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_11 (Length: 453)
Name: NF14363_low_11
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 145 - 438
Target Start/End: Original strand, 12780710 - 12781003
Alignment:
| Q |
145 |
aataataaaatggtgtctcttagtcaatcttaattattgttaggaaattgatttcttagcagcatagcgtaataataacaaaaatgtaatattcaacaca |
244 |
Q |
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| T |
12780710 |
aataataaaatggtgtctcttagtcaatcttaattattgttaggaaattgatttcttagcagcatagcgtaataataacaaaaatgtaatattcaacaca |
12780809 |
T |
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| Q |
245 |
aacattgagataagaatttcttttaacattgaaatgtgatgaccatacagcgtgaatggaatttcctttttattgtgaattcaacttgaatgaaaattac |
344 |
Q |
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| T |
12780810 |
aacattgagataagaatttcttttaacattgaaatatgatgaccatacagcgtgaatggaatttcttttttattgtgaattcaacttgaatggaaattac |
12780909 |
T |
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| Q |
345 |
gtgaacaaatcattcatggaacatatatataaatcaaagttaggtgataggtcgttcttttttctaaattgggtattgttgttgaggtaattaa |
438 |
Q |
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| T |
12780910 |
gtgaacaaatcatgcatggaacatatatataaatcaaagttaggtgataggtcgttcttttttctaaattgggtattgttgttgaggtaattaa |
12781003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 12780543 - 12780691
Alignment:
| Q |
11 |
aaaaagtatgaagaaaatagtaatcaattattattactgaaataatttactaaatgatttggatatgtgt-gtgaccacacgagaactgcttgattgaat |
109 |
Q |
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| T |
12780543 |
aaaaagtatgaagaaaatagtaat----tattattactgaagtaatt-actaaatgatttggatatgtgttgtgaccacacgacaactacttgattgagt |
12780637 |
T |
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| Q |
110 |
gcttcatttattcacgcttcattttgtgataaataaataataaaatggtgtctc |
163 |
Q |
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| T |
12780638 |
gcttcatttattcacgcttcattttgtgataaataaataataaaatggtgtctc |
12780691 |
T |
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