View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_13 (Length: 441)
Name: NF14363_low_13
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 48839392 - 48838978
Alignment:
| Q |
19 |
aaagcgacaaacaagcatagaacatgaacaaataaatgaaacaaaagaatgcatgtgtttatgttgtgttgtgttatgtacgcatatcgtgaaaagtcaa |
118 |
Q |
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| T |
48839392 |
aaagcgacaaacaagcatagaacatgaacaaataaatgaaacaaaagaatgcatgtgtttatgttgtgttgtgttatgtacgcatatcgtgaaaagtcaa |
48839293 |
T |
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| Q |
119 |
attctacggtagttagtaactagacataaggttgtttctattcggacaaaagaagaaaacaataaatcataaatgctactacagtaagttgcacagatag |
218 |
Q |
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| T |
48839292 |
attctacggtagttagtaactagacataaggttgtttctattcggacaaatgaagaaaacaataaatcataaatgctactacagtaagttgcaca----g |
48839197 |
T |
|
| Q |
219 |
ataaccaaccaattcatcttgttttgtgtatactatagtattagtgccgtgcaatgttgttcatcttcgggtctcaaaactaaactgaccatgcttatat |
318 |
Q |
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| T |
48839196 |
ataaccaaccaattcatcttgttttgtgtatactatagtattagtaccgtgcaatgttgttcatcttcgggtctcaaaactcaactgaccatgtttatct |
48839097 |
T |
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| Q |
319 |
atcgattgaattaatcacgttaaaaatagcgctagttgataagtcagtatatattatattaatc--tataaacttattggagagcgtcgaaagtgataat |
416 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||| |||||||||||||||| ||| |
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| T |
48839096 |
atcgattgaattaatcatgttaaaaatagcgctagttgataagt-agtatatattatattaatcgataaaaatttattgaagagcgtcgaaagtgacaat |
48838998 |
T |
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| Q |
417 |
gggctaaatatccatgactc |
436 |
Q |
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| T |
48838997 |
gggctaaatatccatgactc |
48838978 |
T |
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