View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_low_15 (Length: 430)

Name: NF14363_low_15
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_low_15
NF14363_low_15
[»] chr7 (5 HSPs)
chr7 (32-410)||(3367649-3368027)
chr7 (192-256)||(11496296-11496360)
chr7 (229-296)||(11496293-11496360)
chr7 (334-371)||(9891576-9891613)
chr7 (32-76)||(7710916-7710960)
[»] chr4 (3 HSPs)
chr4 (32-410)||(54188561-54188934)
chr4 (33-257)||(8570397-8570616)
chr4 (214-410)||(8570279-8570482)
[»] chr3 (2 HSPs)
chr3 (33-257)||(28696357-28696576)
chr3 (214-410)||(28696239-28696442)
[»] chr6 (2 HSPs)
chr6 (228-296)||(24229339-24229407)
chr6 (192-256)||(24229339-24229403)
[»] chr1 (1 HSPs)
chr1 (192-245)||(29491094-29491147)
[»] chr8 (2 HSPs)
chr8 (228-296)||(19884790-19884858)
chr8 (192-256)||(19884790-19884854)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 32 - 410
Target Start/End: Original strand, 3367649 - 3368027
Alignment:
Q  32 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  3367649 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgccgctgcattc 3367748  T
Q  132 ttgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatca 231  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||||    
T  3367749 ttgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacctagaaaatgtcaattacatca 3367843  T
Q  232 aatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaaccaaagttaataatcaactta 331  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3367844 aatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaaccaaagttaataatcaactta 3367943  T
Q  332 -----aaatcaaatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatcaaaa 410  Q
         |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3367944 aaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatcaaaa 3368027  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 11496296 - 11496360
Alignment:
Q  192 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 256  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||    
T  11496296 aatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 11496360  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 11496293 - 11496360
Alignment:
Q  229 tcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 296  Q
    |||||||| ||||| |||||| || |||||||||| ||||||||||| | |||||||||||| |||||    
T  11496293 tcaaatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 11496360  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 9891576 - 9891613
Alignment:
Q  334 atcaaatccaataaacctagaaatatcaagttatgaat 371  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9891576 atcaaatcaaataaacctagaaatatcaagttatgaat 9891613  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 7710960 - 7710916
Alignment:
Q  32 agtcaaattatcaaacacctgataggcagcacaataataccttgc 76  Q
    |||||||||||||||||||| ||| ||| |||||| |||||||||    
T  7710960 agtcaaattatcaaacacctcatatgcaacacaatcataccttgc 7710916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 32 - 410
Target Start/End: Original strand, 54188561 - 54188934
Alignment:
Q  32 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattc 131  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||     
T  54188561 agtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgccgctgcattt 54188660  T
Q  132 ttgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatca 231  Q
    || | |||||||||||||||||||| |||||||||||||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||||    
T  54188661 tttatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaata-----agaatcaacttaacctagaaaatgtcaattacatca 54188755  T
Q  232 aatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaaccaaagttaataatcaactta 331  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54188756 aatcagaatcaaattaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaaccaaagttaataatcaactta 54188855  T
Q  332 aaatcaaatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatcaaaa 410  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54188856 aaatcaaatcaaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacataaaaa 54188934  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 8570616 - 8570397
Alignment:
Q  33 gtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattct 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  8570616 gtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgtcgctgcattct 8570517  T
Q  133 tgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatcaa 232  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || |||||||||||| ||||||||||||| | ||||||    
T  8570516 tgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacttagaaaatgtcaactgcatcaa 8570422  T
Q  233 atcaaaatcaacttaacttagaaaa 257  Q
    |||| |||||||||||| |||||||    
T  8570421 atcagaatcaacttaacctagaaaa 8570397  T

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Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 214 - 410
Target Start/End: Complemental strand, 8570482 - 8570279
Alignment:
Q  214 aaaatgtcaattacatcaaa--tcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaac 311  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8570482 aaaatctcaattacatcaaaaatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaac 8570383  T
Q  312 caaagttaataatcaacttaaaatca-----aatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatc 406  Q
    ||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8570382 caaagttaataatcaacttaaaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatc 8570283  T
Q  407 aaaa 410  Q
    ||||    
T  8570282 aaaa 8570279  T

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Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 28696576 - 28696357
Alignment:
Q  33 gtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattct 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  28696576 gtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgtcgctgcattct 28696477  T
Q  133 tgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatcaa 232  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || |||||||||||| ||||||||||||| | ||||||    
T  28696476 tgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacttagaaaatgtcaactgcatcaa 28696382  T
Q  233 atcaaaatcaacttaacttagaaaa 257  Q
    |||| |||||||||||| |||||||    
T  28696381 atcagaatcaacttaacctagaaaa 28696357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 214 - 410
Target Start/End: Complemental strand, 28696442 - 28696239
Alignment:
Q  214 aaaatgtcaattacatcaaa--tcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaac 311  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  28696442 aaaatctcaattacatcaaaaatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaac 28696343  T
Q  312 caaagttaataatcaacttaaaatca-----aatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatc 406  Q
    ||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28696342 caaagttaataatcaacttaaaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatc 28696243  T
Q  407 aaaa 410  Q
    ||||    
T  28696242 aaaa 28696239  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 24229407 - 24229339
Alignment:
Q  228 atcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 296  Q
    ||||||||| ||||| |||||| || |||||||||| ||||||||||| | |||||||||||| |||||    
T  24229407 atcaaatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 24229339  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 24229403 - 24229339
Alignment:
Q  192 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 256  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||    
T  24229403 aatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 24229339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 29491094 - 29491147
Alignment:
Q  192 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaact 245  Q
    ||||| ||||||||||||||| ||||  |||||| |||||||||||||||||||    
T  29491094 aatcagaatcaacttaacctaaaaaacttcaattgcatcaaatcaaaatcaact 29491147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 19884858 - 19884790
Alignment:
Q  228 atcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 296  Q
    ||||||||| ||||| |||||| || |||||||||| ||||| ||||| | |||||||||||| |||||    
T  19884858 atcaaatcagaatcatcttaacctaaaaaatgtcaattgcattaaatcagtatcaacttaacctagaaa 19884790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 19884854 - 19884790
Alignment:
Q  192 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 256  Q
    ||||| ||||| ||||||||| |||||||||||| ||| ||||||  ||||||||||| ||||||    
T  19884854 aatcagaatcatcttaacctaaaaaatgtcaattgcattaaatcagtatcaacttaacctagaaa 19884790  T

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