View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_16 (Length: 429)
Name: NF14363_low_16
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 29180560 - 29180149
Alignment:
| Q |
1 |
ttccacatgtggggcatacccacttcagataagtaactctcggaacttccttcacctaagcttggtgatgacccttttaggttttgatcattaatagggt |
100 |
Q |
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| T |
29180560 |
ttccacatgtggggcatacccacttcagataagtaactctcagaacttccttcacctaagcttggtgatgacccttttaggttttgatcattaatagggt |
29180461 |
T |
|
| Q |
101 |
ttctttccatctttgatagttgactcaaaacagcttttaacacttttctatcacatgataaagggtctaagctataaggtgctcctccaaatgtacttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29180460 |
ttctttccatctttgatagttgactcaaaacagcttttaacacttttctatcacatgataaagggtctaagctataaggtgctcctccaaatgtacttgc |
29180361 |
T |
|
| Q |
201 |
attgttattgttggctagaggtaattttggttctatattggttgttatatggttgtagattgggttggtttggttttgagaaaacatggagaagcagggc |
300 |
Q |
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| T |
29180360 |
attgttattgttggctagaggtaattttggttccatattggttgttatattgttgtagattgggttggtttggttttgagaaaacatggagaagcagggc |
29180261 |
T |
|
| Q |
301 |
acttgctcatattcatctgtatggaattgagcttggtcaaaacttatgtaagaatccattaatgctggaagtgatgaagagcctgtgtcatcatagcaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29180260 |
acttgctcatattcatctgtatggaattgagcttggtcaaaacttatgtaagaatccattaatgctggaagtgatgaagagcctgtgtcatcatagcaac |
29180161 |
T |
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| Q |
401 |
tacccatgcttg |
412 |
Q |
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|||||||||||| |
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| T |
29180160 |
tacccatgcttg |
29180149 |
T |
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