View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_17 (Length: 412)
Name: NF14363_low_17
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 9825620 - 9826001
Alignment:
| Q |
1 |
agattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttttcagtaatccaaagctg |
100 |
Q |
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| T |
9825620 |
agattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttttcagtaatccaa-gctg |
9825718 |
T |
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| Q |
101 |
aaataaatttctgtagtaatttgagaaacagaagtgtatgcaatatgatgtgatgcaatgcaagttcaactagactcaagtcacaagtgtaaaattgttt |
200 |
Q |
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| T |
9825719 |
aaataaatttctgcagtaatttgagaaacag-----tgtgcaatacgatg-----cactgcaagttcaactagactcaagtcacaagtgtaaaattgttt |
9825808 |
T |
|
| Q |
201 |
gttaaattttcctcttgttttaccatttgaatgcatcaatccatcattcatgtaatatcaagcatatatattcaatgaatgcaatagtgggcttattata |
300 |
Q |
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| T |
9825809 |
gataaatttttctcttgttttaccatttgaatgcatcaatccatcattcatgtaatatcaagcatatattt--aatgaatgcaatagtgggcttattata |
9825906 |
T |
|
| Q |
301 |
tatgattttgcgaacttcattccaaaaacataaaaaagctctcaagctaggattcatttttggaggattctgtggatcatgaataggtggatata |
395 |
Q |
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| T |
9825907 |
tatgattttgcgaacttcattccaaaaacataaaaaagctctcaagctaggattcatttttggaggattctgtggatcatgaataggtggatata |
9826001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 9843129 - 9843004
Alignment:
| Q |
174 |
actcaagtcacaagtgtaaaattgtttgttaaattttcctcttgttttaccatttgaatgcatcaatccatcattcatgtaatatcaagcatatatattc |
273 |
Q |
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| T |
9843129 |
actcaagtcacaagtgtaaaattgtttgataaattttcctcttgttttaccatttgaatgcatcaatccatcattcatgtaatatcaagcat--atattt |
9843032 |
T |
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| Q |
274 |
aatgaatgcaatagtgggcttattatat |
301 |
Q |
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| T |
9843031 |
aatgaatgcaatagtggacttattatat |
9843004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 10560018 - 10560096
Alignment:
| Q |
223 |
ccatttgaatgcatcaatccatcattcatgtaatatcaagcatatatattcaatgaatgcaatagtgggcttattatat |
301 |
Q |
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| T |
10560018 |
ccattttaatgtattaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttattatat |
10560096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 10559490 - 10559544
Alignment:
| Q |
29 |
aaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttt |
83 |
Q |
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| T |
10559490 |
aaaatctgcatttgtatgttgaaaattcatttcctaataatgttatgcagatttt |
10559544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 10559910 - 10559975
Alignment:
| Q |
84 |
tcagtaatccaaagctgaaataaatttctgtagtaatttgagaaacagaagtgtatgcaatatgatg |
150 |
Q |
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| T |
10559910 |
tcagtaatc-aaagctaaaataaatttctgcaataatttcagaaatagaagtttatgcaatatgatg |
10559975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 19604988 - 19604922
Alignment:
| Q |
181 |
tcacaagtgtaaaattgtttgttaaattttcctcttgttttaccatttgaatgcatcaatccatcatt |
248 |
Q |
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| T |
19604988 |
tcacaagtgtaaaatagtttgctaaatttt-ctcttgtcttgctatttgaatgcatgaattcatcatt |
19604922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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