View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_19 (Length: 399)
Name: NF14363_low_19
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Complemental strand, 22075534 - 22075151
Alignment:
| Q |
3 |
atcaacaggggaagtgaacacgacaatcaatggcattgtatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcctgtggatttc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22075534 |
atcaacaggggaagtgaacacgacaatcaatggcattgtatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcctatggatttc |
22075435 |
T |
|
| Q |
103 |
ttttccgttgctaaggcactggggaaggcaccatctttggcaccaaaaccttcaaccgattccgcaaaggcgcctaaacccgataaggatacatcctcag |
202 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22075434 |
ttttccgttgctaaggcaccggggaaggcaccatctttggcaccagaaccttcaaccgattccgcaaaggcgcctaaacccgataaagatacatcctcag |
22075335 |
T |
|
| Q |
203 |
attcgtcgcaggtaattaatccaactgaagacaagtctagttccgtggagattgtgtatggaaagtttgtgtcacttggacttgtattagcttttgtgat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22075334 |
attcgtcgcaggtaattaatccaactgaagacaagtctagctccgtgaagattgtgtatggaaagttcgtgtcacttggacttgtattagcttttgtgat |
22075235 |
T |
|
| Q |
303 |
gatcatgatgcaaacatgatattgaaacaagtggatatgctgatgagcttcattttcagaaacatgcaccttctgttacatttt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22075234 |
gatcatgatgcaaacatgatattgaaacaagtggatatgctgatgagcttcattttcagaaacatgcaccttctgttacatttt |
22075151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 22059653 - 22059942
Alignment:
| Q |
7 |
acaggggaagtgaacacgacaatcaatggcattgtatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcctgtggatttctttt |
106 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||| |
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| T |
22059653 |
acaggggaagtgaacacgacaatcaatggcattatatataccgataaacgtcttgctatttacaaagttggcaaagtgcttcttcctatggatttctttt |
22059752 |
T |
|
| Q |
107 |
ccgttgctaaggcactggggaaggcaccatctttggcaccaaaaccttcaaccgattccgcaaaggcgcctaaacccgataaggatacatcctcagattc |
206 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||||||||| |||||||| |||||||| |
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| T |
22059753 |
ccgttgctaaggcaccggggaaggcaccatctttggcaccagaaccttcaaccgatacagcaaaggcacctaaacccgataaagatacatcatcagattc |
22059852 |
T |
|
| Q |
207 |
gtcgcaggtaattaatccaactgaagacaagtctagttccgtggagattgtgtatggaaagtttgtgtcacttggacttgtattagcttt |
296 |
Q |
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||||||||| ||||||||||||| | |||||||| | || | |||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
22059853 |
gtcgcaggtgattaatccaactgtaaacaagtctggctctatcaagattgtgtatggaaagtggatgtcagttggacttgtattaccttt |
22059942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 19403388 - 19403506
Alignment:
| Q |
3 |
atcaacaggggaagtgaacacgacaatcaatggcattgtatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcctgtggatttc |
102 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
19403388 |
atcaacaggggaagtgaacacaacgatcgatggcattatatatactgataaacgtcttgctatttataaagttggcaaagtgcttcttcctatggatttc |
19403487 |
T |
|
| Q |
103 |
ttttccgttgctaaggcac |
121 |
Q |
| |
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||||| ||||||||||||| |
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|
| T |
19403488 |
ttttctgttgctaaggcac |
19403506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 40045191 - 40045140
Alignment:
| Q |
41 |
tatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcc |
92 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
40045191 |
tatataccgataaacatcttgctatttataaagttggtaaagtgcttattcc |
40045140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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