View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_2 (Length: 762)
Name: NF14363_low_2
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 18 - 749
Target Start/End: Original strand, 53482697 - 53483428
Alignment:
| Q |
18 |
agaacataccatgcgctgttcgatgtgtggcaccacgcatgtggccttctattagtcagtcaactcatcacttaacagagatccattaacaacaatggca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53482697 |
agaacataccatgcgctgttcgatgtgtggcaccacgcatgtggccttctattagtcagtcaactcatcacttaacagagatccattaacaacaatggca |
53482796 |
T |
|
| Q |
118 |
aaaaatgagcattaacccaatttggtcctttgcaattttctagtgacccaattttgtcgctggccaaaataaaacccaaattagtccctgactcattata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53482797 |
aaaaatgagcattaacccaatttggtcctttgcaattttctagtgacccaatttagtcgctggccaaaataaaacccaaattagtccctgactcattata |
53482896 |
T |
|
| Q |
218 |
aacagatggactgatttgtccacggcatgaaaatttcagggactactttgggttttatttttgtcgaggactaaatttggcctcgtgagaattgtgaagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53482897 |
aacagatggactgatttgtccacggcatgaaaatttcagggactactttgggttttatttttgtcgaggactaaatttggcctcgtgagaattgtgaagg |
53482996 |
T |
|
| Q |
318 |
accaaattgggtcttcactcatatttttataaggacttaaagtgaaaaaatttaagaaaatttagatgagaaagggcaacaggcaacctggtgctgtata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53482997 |
accaaattgggtcttcactcatatttttataaggacttaaagtgaaaaaatttaagaaaatttagatgagaaagggcaacaggcaacctggtgctgtata |
53483096 |
T |
|
| Q |
418 |
gctctcttcatggctgagtctagggcaaaccatcgtgggtctattgtacagtcatatcttgcatttgcaagaggttaattccacgactcgaatctatgac |
517 |
Q |
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| T |
53483097 |
gctctcttcatggctgagtctagggcaaaccatcgtgggtctattgtacagtcatatcttgcatttgcaagaggttaattccacgactcgaatctatgac |
53483196 |
T |
|
| Q |
518 |
ttcttagttacccaatgacgattcctatcacattgccaactgcaagactcccattctcgaatatttagatgatgctcccaaattggaagtctttccttgc |
617 |
Q |
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| T |
53483197 |
ttcttatttacccaatgacgattcctatcacattgccaactgcaagactcccattctcgaatatttagatgatgctcccaaattggaagtctttccttgc |
53483296 |
T |
|
| Q |
618 |
agaaataatctcctagttgagactacatctgcaatgctggccatcttgtcgcagttagtgactttgagaactaccgttacttaggacatttaagtcatta |
717 |
Q |
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| T |
53483297 |
agaaataatctcctagttgagactacatctgtaatgctggccatcttgtcgcagttagtgactttgagaactaccgttacttaggacatttaagtcatta |
53483396 |
T |
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| Q |
718 |
agacattgatcattatcaaatattctgagtat |
749 |
Q |
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| T |
53483397 |
agacattgatcattatcaaatattctgagtat |
53483428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 11098625 - 11098510
Alignment:
| Q |
225 |
ggactgatttgtccacggcatgaaaatttcagggactactttgggttttatttttgtcgaggactaaatttggcctcgtgagaattgtgaaggaccaaat |
324 |
Q |
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|||||||||||||| ||| |||||||| | |||||||| |||||||| ||||||||| ||||| || | | || || | ||||||||||||||| |
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| T |
11098625 |
ggactgatttgtccccggtatgaaaatgttagggactaaattgggtttaatttttgtcagggactgaaatggtccgtcagaaagttgtgaaggaccaaaa |
11098526 |
T |
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| Q |
325 |
tgggtcttcactcata |
340 |
Q |
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|||||||||||||||| |
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| T |
11098525 |
tgggtcttcactcata |
11098510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 30555775 - 30555828
Alignment:
| Q |
457 |
tctattgtacagtcatatcttgcatttgcaagaggttaattccacgactcgaat |
510 |
Q |
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|||| ||||||||| || ||||||||||||||||||| ||||||||||| |||| |
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| T |
30555775 |
tctagtgtacagtcttaccttgcatttgcaagaggttgattccacgacttgaat |
30555828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 31317866 - 31317781
Alignment:
| Q |
247 |
aaaatttcagggactactttgggttttatttttgtcgaggactaaatttggcctcgtgagaattgtgaaggaccaaattgggtctt |
332 |
Q |
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| T |
31317866 |
aaaatgtcagggactagtttggtattattttttgtcggggactaaattaggccgtgagaaaactgtcaaggaccaaattgggtctt |
31317781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 42851581 - 42851504
Alignment:
| Q |
270 |
ttttatttttgtcgaggactaaatttggcctcgtgagaattgtgaaggaccaaattgggtcttcactcatatttttat |
347 |
Q |
| |
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|||| ||||||||| |||||||||| |||| || || |||| |||||||||||| ||||||||| ||| || |||||| |
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| T |
42851581 |
ttttttttttgtcggggactaaattgggccacgggaaaattatgaaggaccaaaatgggtcttccctcttagttttat |
42851504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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