View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_28 (Length: 339)
Name: NF14363_low_28
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_28 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 35095932 - 35096080
Alignment:
| Q |
191 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatttttg |
290 |
Q |
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| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatttttg |
35096031 |
T |
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| Q |
291 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagc |
339 |
Q |
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| T |
35096032 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagc |
35096080 |
T |
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Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 35095754 - 35095881
Alignment:
| Q |
13 |
tgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095754 |
tgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatg |
35095853 |
T |
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| Q |
113 |
gtgccataataataaaatatagtgaagg |
140 |
Q |
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| T |
35095854 |
gtgccataataataaaatatagtgaagg |
35095881 |
T |
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