View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_29 (Length: 335)
Name: NF14363_low_29
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 3019518 - 3019790
Alignment:
| Q |
45 |
gatgttattcccctacaccattttctttaaaaacttaatgaaaagttggttgatacctccaatgctaggtcatctcatgggtccaagctaaacagaccat |
144 |
Q |
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| T |
3019518 |
gatgttattcccctacaccattttctttaaaaacttaatgaaaagtcggttgatacctccaatgctagggcatctcatgggtccaagctaaatagaccat |
3019617 |
T |
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| Q |
145 |
gtgatcattgatattataactagaaaaaacaccgcaatatcatgtgtcactagtgtaaattgtgccattcaagacgaattagcaatgacaccaagagaat |
244 |
Q |
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| T |
3019618 |
gtgatcattgatattataactag-aaaaacaccgcaatatcatgcgtcactagtgcaaattgtgtcattcaagacgaattaacgatgacaccaagagaat |
3019716 |
T |
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| Q |
245 |
ttatattgtgttatgggatgacaacatcatatcattcacaatgtctggattcattctatccaagctattcaaaa |
318 |
Q |
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| T |
3019717 |
ttatattgtgttatgggatgacaacatcatatgattcacaaagtcttgattctttctatccaagctattcaaaa |
3019790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 318
Target Start/End: Original strand, 3021193 - 3021421
Alignment:
| Q |
91 |
tggttgatacctccaatgctaggtcatctcatgggtccaagctaaacagaccatgtgatcattgatattataactagaaaaaacaccgcaatatcatgtg |
190 |
Q |
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| T |
3021193 |
tggttgatacctcctatggtaggtcattttatgagtccaagctaaacggacgatgtgatcattgatattataactag-aaaaacaccacaatatcatgtg |
3021291 |
T |
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| Q |
191 |
tcactagtg---taaattgtgccattcaagacgaattagcaatgacaccaagagaatttatattgtgttatgggatgacaacatcatatcattcacaatg |
287 |
Q |
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| T |
3021292 |
tcattagtgcatttaaccgtgctattcaagacgaattagtgattaca-caagagaatttatattgtgttatgggatgataacattgtaagattcacaatg |
3021390 |
T |
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| Q |
288 |
tctggattcattctatccaagctattcaaaa |
318 |
Q |
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| T |
3021391 |
actgaattctttctatccaaactattgaaaa |
3021421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3021086 - 3021165
Alignment:
| Q |
1 |
gagagagtaataaagagaggaagagaaagagatggatgggatacgatgttattcccctacaccattttctttaaaaactt |
80 |
Q |
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| T |
3021086 |
gagagagtaacaaaaagatgaagagaaagagatggatggaataccatgttcttctcctatacccttttctataaaaactt |
3021165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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