View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_3 (Length: 697)
Name: NF14363_low_3
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 13269094 - 13269643
Alignment:
| Q |
18 |
agatgaaccactcattttctctgaagctggacttggattcatcttttgtaaagattcaaacttcactccacgaccacttgtaaatgcaattttagtagca |
117 |
Q |
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| T |
13269094 |
agatgaaccattcattttctctgaagctggacttgtattc---ttttgtaaagattcaaacttcactccacgaccacttgtaaatgcaattttagtagca |
13269190 |
T |
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| Q |
118 |
gtgcctaaaatatccaaggttagaatgattataaactcatttctataaaacaatgttaaaaggttaagaaatcttgctaatgtgtacactattgaccata |
217 |
Q |
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| T |
13269191 |
gtgcctaaagtatccaaggttagaatgattataaactcatttctataaaacaatgttaaaaggttaagaaatcttgctaatgtgtacactattgaccata |
13269290 |
T |
|
| Q |
218 |
aataatttagtgaaacaaatcaatatacctgtgacaaccatttcttgaacatcaagatcactagtcctcacttcagttggcaaaaactgagctggtgtcc |
317 |
Q |
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| T |
13269291 |
aattatttagtgaaacaaatcaatatacctgtgacaaccatttcttgaacatcaagatcagtagtcctcacttcagttggcaaaaactgagctggtgtcc |
13269390 |
T |
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| Q |
318 |
catctgaatcttcaaagttagataaaagaaccacatctagaatatcttcaaaagccgcatcggtgttctcatcggtatttttcacttgactgtgatcaac |
417 |
Q |
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| T |
13269391 |
catctgaatcttcaaagttagataaaagaacctcatgtagaatatcttcaaaagccacatctgtgttctcatcagtatttttcacttgactgtgatcaac |
13269490 |
T |
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| Q |
418 |
ttcctcctcattgacaccaatccgcatgttttcctccccatcagaaaatccaatatcaattggtgtcactgaaatgtttagcagattggtaggtgaacaa |
517 |
Q |
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| T |
13269491 |
ttcctcctcattgacaccaatctgcatgttttcctccccatcagaaaatccaatatctattggtgtcactgaaatgttttgcagattggcagatgaacca |
13269590 |
T |
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| Q |
518 |
atcattttccctgaagctggactaacactaatcttttgtgaagattcaaactt |
570 |
Q |
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| T |
13269591 |
atcactttctctgaaactggactgacattcaccttttgtgaacattcaaactt |
13269643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 110 - 253
Target Start/End: Original strand, 13270755 - 13270898
Alignment:
| Q |
110 |
tagtagcagtgcctaaaatatccaaggttagaatg-attataaactcatttctataaaacaatgttaaaaggttaagaaatcttgctaatgtgtacacta |
208 |
Q |
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| T |
13270755 |
tagtagcagtgcctaaaatatccaaggttagaaaatatgataaactcatttgtataaaacaatgttaatagattgagaaatctttctaatatgtacacta |
13270854 |
T |
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| Q |
209 |
ttgaccataaataatttagtgaaacaaatcaatatacctgtgaca |
253 |
Q |
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| T |
13270855 |
-tgaccatagattatttcacgaaacaaatcaacttacctgcgaca |
13270898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 13267468 - 13267614
Alignment:
| Q |
114 |
agcagtgcctaaaatatccaaggttagaatgattataaactcatttctataaaacaatgttaaaaggttaagaaatcttgctaatgtgtac--actattg |
211 |
Q |
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| T |
13267468 |
agcagtgcataaaatatc-aaggttagagagattataagctcatttgtataaaacagtgtgaaaaggttaagaaatcaagctaatatgtacatacta-tg |
13267565 |
T |
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| Q |
212 |
accataaataatttagtgaaacaaatcaatatacctgtgacaaccattt |
260 |
Q |
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| T |
13267566 |
accataaattatctggcaaaacaaatacatttacctgtaacaaccattt |
13267614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 540
Target Start/End: Original strand, 13268981 - 13269126
Alignment:
| Q |
395 |
tttttcacttgactgtgatcaacttcctcctcattgacaccaatccgcatgttttcctccccatcagaaaatccaatatcaattggtgtcactgaaatgt |
494 |
Q |
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| T |
13268981 |
tttttcacttcactaggatcaacttgctcctcatcgacaccaattgacatgctttcctccccatcacaaaaatcaatatctctcggagtcactggattat |
13269080 |
T |
|
| Q |
495 |
ttagcagattggtaggtgaacaaatcattttccctgaagctggact |
540 |
Q |
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| T |
13269081 |
ttagcagccttgtagatgaaccattcattttctctgaagctggact |
13269126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 13269580 - 13269648
Alignment:
| Q |
17 |
cagatgaaccactcattttctctgaagctggacttggattcatcttttgtaaagattcaaacttcactc |
85 |
Q |
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| T |
13269580 |
cagatgaaccaatcactttctctgaaactggactgacattcaccttttgtgaacattcaaacttcactc |
13269648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 13269872 - 13269959
Alignment:
| Q |
313 |
tgtcccatctgaatcttcaaagttagataaaagaaccacatctagaatatcttcaaaagccgcatcggtgttctcatcggtatttttc |
400 |
Q |
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| T |
13269872 |
tgtcccatctgaatcatcaaaactacacgaacaaacctcatctagattatcttcaacaggcacatcggtgttctcatcagtatttttc |
13269959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 13260821 - 13260910
Alignment:
| Q |
309 |
ctggtgtcccatctgaatcttcaaagttagataaaagaaccacatctagaatatcttcaaaagccgcatcggtgttctcatcggtatttt |
398 |
Q |
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| T |
13260821 |
ctggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttgaacagccacattagtgttctcgtcggtatttt |
13260910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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