View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_30 (Length: 332)
Name: NF14363_low_30
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 21835829 - 21835959
Alignment:
| Q |
184 |
tgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactgtttaatctgatttctgaggtcacctatggt |
283 |
Q |
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| T |
21835829 |
tgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattctaattgctgaggttacctatgct |
21835928 |
T |
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| Q |
284 |
ttatttgctaatgaatttgatgaaatgtatc |
314 |
Q |
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| T |
21835929 |
ttgtttgctaacgaatgtgatgaattgtatc |
21835959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 21835696 - 21835743
Alignment:
| Q |
65 |
tggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag |
112 |
Q |
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| T |
21835696 |
tggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatag |
21835743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 392352 - 392285
Alignment:
| Q |
233 |
ttattaacctcattgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatt |
300 |
Q |
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| T |
392352 |
ttattaacctcattgttactgttcaatctgatttctgaggtcacctttgctttatttgctaataaatt |
392285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 10580453 - 10580499
Alignment:
| Q |
33 |
atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa |
79 |
Q |
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| T |
10580453 |
atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa |
10580499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 6414440 - 6414336
Alignment:
| Q |
154 |
gttataattgttggtgcaagaagtttgttttgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactg |
253 |
Q |
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| T |
6414440 |
gttataattttttgcgcaaaaagtttattctgtcgtattaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttactg |
6414341 |
T |
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| Q |
254 |
tttaa |
258 |
Q |
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|||| |
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| T |
6414340 |
attaa |
6414336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 392425 - 392382
Alignment:
| Q |
124 |
aactgagtgcctaagaatttcctttatttcgttataattgttgg |
167 |
Q |
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| T |
392425 |
aactgagtgcctaagaatttcctttattttgttattattgttgg |
392382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 392388 - 392351
Alignment:
| Q |
183 |
ttgttggattaatgtgtagttttccaaaaggatttgtt |
220 |
Q |
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| T |
392388 |
ttgttggaatgatgtgtagttttccaaaaggatttgtt |
392351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 6590575 - 6590612
Alignment:
| Q |
275 |
acctatggtttatttgctaatgaatttgatgaaatgta |
312 |
Q |
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| T |
6590575 |
acctatgtttaatttgctaatgaatttgatgaaatgta |
6590612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 36768788 - 36768862
Alignment:
| Q |
38 |
tacaggttactggagatccaatgaaggtggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag |
112 |
Q |
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| T |
36768788 |
tacaggttactggagacccagggaagatggttgcagtccagagaaatttcggcaagtttggaattaaagaaatag |
36768862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 37046524 - 37046587
Alignment:
| Q |
245 |
ttgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatttgatgaaat |
309 |
Q |
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| T |
37046524 |
ttgttactgtttattctgactgctg-ggttacctatgtttaatttgctaatgaatttgatgaaat |
37046587 |
T |
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