View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_low_35 (Length: 307)

Name: NF14363_low_35
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_low_35
NF14363_low_35
[»] chr3 (5 HSPs)
chr3 (17-293)||(2564392-2564673)
chr3 (42-101)||(45261332-45261391)
chr3 (35-101)||(32211910-32211976)
chr3 (41-96)||(18085674-18085730)
chr3 (111-143)||(41943326-41943358)
[»] chr8 (2 HSPs)
chr8 (36-101)||(36054778-36054843)
chr8 (40-101)||(8251202-8251263)
[»] chr7 (1 HSPs)
chr7 (39-103)||(42935419-42935483)
[»] chr6 (2 HSPs)
chr6 (35-101)||(180301-180367)
chr6 (42-101)||(606738-606797)
[»] chr2 (4 HSPs)
chr2 (36-101)||(3269319-3269384)
chr2 (36-101)||(3269878-3269943)
chr2 (35-101)||(40442679-40442745)
chr2 (36-101)||(3268760-3268825)
[»] chr5 (1 HSPs)
chr5 (39-101)||(6688752-6688814)
[»] chr1 (2 HSPs)
chr1 (43-101)||(24547395-24547453)
chr1 (35-101)||(17971483-17971549)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-101)||(154301-154367)
[»] chr4 (1 HSPs)
chr4 (43-96)||(27032109-27032160)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 2564392 - 2564673
Alignment:
Q  17 aatgatatagtccatcgagtcctatatata--agaaaattttcaaaatattttttgattctaattataagaaaatatcacaaattttgatgaaaacat-- 112  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||      
T  2564392 aatgatatactccatcgagtcctatatatataagaaaattttcaaaatattttttggtcctaattataagaaaatatcacaaattttgatggaaacatat 2564491  T
Q  113 -----gttgtttgatttgtttcaatgaatatttttacgaaatgctaaatcttacgacatatattttcgctagatatagcattccccatatccatgagagt 207  Q
         ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  2564492 aatatgttgtttgatttgtttcaatgaatatttttacggaatgctaaatcttacgtcatatattttcgctagatataacattccccatatccgtgagagt 2564591  T
Q  208 atttccgcgtacaccaccaaagaagaaagaaatgctagtatatgaagttaatcaattttcactggatattcgtgagagtatattct 293  Q
    |||| |||||||||||||||||||| |     |||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  2564592 attttcgcgtacaccaccaaagaaggag----tgctagtatatgaagttaatcaattttcaccggatattcgtgagagtattttct 2564673  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 45261332 - 45261391
Alignment:
Q  42 atataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||||| | ||||||| | ||| |||||||||||| |||||| ||||    
T  45261332 atataagaaaattttcaaatttttttttggtcctatttataagaaaatgtcacaactttt 45261391  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 32211976 - 32211910
Alignment:
Q  35 gtcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||||||||||||| | || ||| |  || |||||||||||| |||||| ||||    
T  32211976 gtcctatatataagaaaattttcaaaaaaattgttggtcttatttataagaaaatttcacaactttt 32211910  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 18085730 - 18085674
Alignment:
Q  41 tatataagaaaattttca-aaatattttttgattctaattataagaaaatatcacaa 96  Q
    |||||||||||||||||| ||| |||| ||| | ||| |||||||||||||||||||    
T  18085730 tatataagaaaattttcagaaaaatttgttgttcctatttataagaaaatatcacaa 18085674  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 41943326 - 41943358
Alignment:
Q  111 atgttgtttgatttgtttcaatgaatattttta 143  Q
    |||||||||||||||| ||||||||||||||||    
T  41943326 atgttgtttgatttgtctcaatgaatattttta 41943358  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 36054778 - 36054843
Alignment:
Q  36 tcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||||||||||||||||||||| |||||| | ||| |||||||||||| |||||| ||||    
T  36054778 tcctatatataagaaaattttcaaaataatttttggtcctatttataagaaaatgtcacaactttt 36054843  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 8251202 - 8251263
Alignment:
Q  40 atatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||| |||| | | |||| | ||| ||||||||||||||||||| ||||    
T  8251202 atatataagaaaattttaaaaaaaatatttggtcctatttataagaaaatatcacaactttt 8251263  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 42935419 - 42935483
Alignment:
Q  39 tatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaattttga 103  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||  |||||| ||||||    
T  42935419 tatatataagaaaattttcaaaattttttttggttctatttataagaaaaagtcacaacttttga 42935483  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 180301 - 180367
Alignment:
Q  35 gtcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||| |||||||||||||||||||| |||| ||| | ||| ||||||||||||||||||| ||||    
T  180301 gtcctaaatataagaaaattttcaaaaaatttgttggtcctatttataagaaaatatcacaattttt 180367  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 606797 - 606738
Alignment:
Q  42 atataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||||||| ||||||| | ||| |||||||||||| |||||| ||||    
T  606797 atataagaaaattttcaaaattttttttggtcctatttataagaaaatgtcacaactttt 606738  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 3269319 - 3269384
Alignment:
Q  36 tcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||||||||||||||||||| | | |||| | | ||||||||||||||||||||| ||||    
T  3269319 tcctatatataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaactttt 3269384  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 3269878 - 3269943
Alignment:
Q  36 tcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||||||||||||||||||| | | |||| | | ||||||||||||||||||||| ||||    
T  3269878 tcctatatataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaactttt 3269943  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 40442679 - 40442745
Alignment:
Q  35 gtcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||| |||||| |||||||| | ||||||||| ||| |||||||||||| |||||| ||||    
T  40442679 gtcctatataaaagaaatttttcaaatttttttttgatcctatttataagaaaatgtcacaactttt 40442745  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 3268760 - 3268825
Alignment:
Q  36 tcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||| ||||||||||||||||||| | | |||| | | ||||||||||||||||||||| ||||    
T  3268760 tcctatgtataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaactttt 3268825  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 6688752 - 6688814
Alignment:
Q  39 tatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||||||||| || || || | |||| |||||||||||||||||| ||||    
T  6688752 tatatataagaaaattttcaaaaaatattatggtcctaaatataagaaaatatcacaactttt 6688814  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 24547395 - 24547453
Alignment:
Q  43 tataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||| |||||| ||||    
T  24547395 tataagaaaattttcaaaaatttttttgatcctatttataagaaaatgtcacaagtttt 24547453  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 17971549 - 17971483
Alignment:
Q  35 gtcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    ||||||||||||||||||||||||||| |  ||||| | ||| |||||||||||  |||||| ||||    
T  17971549 gtcctatatataagaaaattttcaaaaaacgttttggtcctatttataagaaaaagtcacaactttt 17971483  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 154301 - 154367
Alignment:
Q  35 gtcctatatataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaaatttt 101  Q
    |||||||||||||| |||||||   || |||||||| ||||| |||||||||||||| |||| ||||    
T  154301 gtcctatatataaggaaatttttttaaaattttttggttctatttataagaaaatattacaactttt 154367  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 27032109 - 27032160
Alignment:
Q  43 tataagaaaattttcaaaatattttttgattctaattataagaaaatatcacaa 96  Q
    |||||||||||||||||  ||||||||| ||||| ||||| |||||||||||||    
T  27032109 tataagaaaattttcaa--tattttttggttctatttataggaaaatatcacaa 27032160  T

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