View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_low_36 (Length: 301)

Name: NF14363_low_36
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_low_36
NF14363_low_36
[»] chr1 (1 HSPs)
chr1 (16-281)||(48838698-48838964)
[»] chr3 (3 HSPs)
chr3 (58-166)||(43978626-43978733)
chr3 (48-120)||(53595950-53596021)
chr3 (48-120)||(53596265-53596336)
[»] chr2 (2 HSPs)
chr2 (47-166)||(19548133-19548251)
chr2 (90-154)||(40801137-40801201)
[»] chr7 (1 HSPs)
chr7 (47-120)||(23578101-23578173)
[»] chr8 (1 HSPs)
chr8 (48-128)||(2954597-2954676)
[»] chr5 (3 HSPs)
chr5 (57-148)||(8215497-8215586)
chr5 (88-120)||(13043025-13043057)
chr5 (88-120)||(13113021-13113053)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 48838698 - 48838964
Alignment:
Q  16 aatatagatttattctgataatgtattcattattgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatata 115  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48838698 aatataaatttattctgttaatgtatccattattgttggatttcaagtgtgagtgattaaagtctcacacttactaaaaatagagaaaacattggatata 48838797  T
Q  116 taagacagaaga-cttatatatctattgttttaatgttttgggtggatatgttgtctgcaagtcttttggtggttgtggatgtttagtccattgccgatt 214  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  48838798 taagacagaaaaacttatatatctattgttttaatgttttgggtggatatgttgtgtgtaagtcatttggtggttgtggatgtttagtccattgccgatt 48838897  T
Q  215 tcgatgctctccaaacttcctaacaagtgctatcacatagcaaaacggcatccgatgtggatcaaac 281  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  48838898 tcgacgctctccaaacttcctaacaagtgctatcacataggaaaacggcatctgatgtggatcaaac 48838964  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 43978733 - 43978626
Alignment:
Q  58 tcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaatgttttggg 157  Q
    |||||||||||||||||  ||| ||||   ||||| ||| ||| ||||||||||||||||||| || ||||| ||||| ||||||  |||| ||||||||    
T  43978733 tcaagtgtgagtgattat-gtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgccttaaggttttggg 43978635  T
Q  158 tggatatgt 166  Q
    |||| ||||    
T  43978634 tggagatgt 43978626  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 53595950 - 53596021
Alignment:
Q  48 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 120  Q
    ||||||||  ||||||| |||||||||  ||| |||| | |||||||||||||||||  ||||||||||||||    
T  53595950 ttgttggaaatcaagtgcgagtgattat-gtcccacattgactagaaatagagaaaatgttggatatataaga 53596021  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 53596265 - 53596336
Alignment:
Q  48 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 120  Q
    ||||||||  ||||||| |||||||||  ||| |||| | |||||||||||||||||  ||||||||||||||    
T  53596265 ttgttggaaatcaagtgcgagtgattat-gtcccacattgactagaaatagagaaaatgttggatatataaga 53596336  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 19548133 - 19548251
Alignment:
Q  47 attgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgtttt 146  Q
    |||||||| ||||||| ||||||| |||  ||| ||||   ||||||||||||| |||  |||||||||||||| || ||||  ||||||||| ||| ||    
T  19548133 attgttgggtttcaagcgtgagtggttat-gtcccacatcgactagaaatagaggaaatgttggatatataagagaggagacccatatatctaatgtctt 19548231  T
Q  147 aatgttttgggtggatatgt 166  Q
    || |||||||||||| ||||    
T  19548232 aaggttttgggtggagatgt 19548251  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 40801201 - 40801137
Alignment:
Q  90 tagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaatgtttt 154  Q
    ||||||| |||||||| || ||||||||||| |||||| ||||||| ||| ||| ||||||||||    
T  40801201 tagaaattgagaaaacgtttgatatataagagagaagatttatatacctaatgtcttaatgtttt 40801137  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 23578173 - 23578101
Alignment:
Q  47 attgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 120  Q
    |||||||| ||||| |||||||||||||| ||| ||||   | ||||||| |||||||| ||||||||||||||    
T  23578173 attgttgggtttcatgtgtgagtgattaa-gtcccacatcgagtagaaatggagaaaacgttggatatataaga 23578101  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 2954676 - 2954597
Alignment:
Q  48 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagac 128  Q
    ||||||| |||||||||||||||||| | ||| ||||   ||||| ||| |||||||  |||||||||||||| |||||||    
T  2954676 ttgttgggtttcaagtgtgagtgatt-atgtcccacatagactaggaatggagaaaatgttggatatataagagagaagac 2954597  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 8215586 - 8215497
Alignment:
Q  57 ttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaa 148  Q
    |||||||||||||| |||   ||||||||  |||| |||||||||||| |||| |||||||| | ||| ||||||||||  |||||| ||||    
T  8215586 ttcaagtgtgagtggttac--tctcacaccaactaaaaatagagaaaatattgtatatataaaagagacgacttatatacttattgtcttaa 8215497  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 13043025 - 13043057
Alignment:
Q  88 actagaaatagagaaaacattggatatataaga 120  Q
    ||||||||||||| |||||||||||||||||||    
T  13043025 actagaaatagagcaaacattggatatataaga 13043057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 13113021 - 13113053
Alignment:
Q  88 actagaaatagagaaaacattggatatataaga 120  Q
    ||||||||||||| |||||||||||||||||||    
T  13113021 actagaaatagagcaaacattggatatataaga 13113053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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