View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_37 (Length: 294)
Name: NF14363_low_37
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_37 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 42187753 - 42188036
Alignment:
| Q |
1 |
tcaccattatggctaataccaatctttactgaacaaacctaacataaaa-caaactattcatcattagtacttaaagttgtgtacattattatagttgtt |
99 |
Q |
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| T |
42187753 |
tcaccattatggctaataccaatctttactgaacaaacctaacataaaaacaaactattcatcattagtacttaaagttgtgtacattattatagttgtt |
42187852 |
T |
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| Q |
100 |
gagaagcagcattaaccggtattcctcatcccagcagcaatcccgtttacagtgataagcaaagcatctctgagtttaaggttgtcgtcatcacgcctca |
199 |
Q |
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| T |
42187853 |
gagaagcagcgttaaccggtattcctcatcccagcagcaatcccatttacagtgataagcaaagcatctctgagtttaaggttgtcgtcatcacgcctca |
42187952 |
T |
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| Q |
200 |
acctcttcagaatctccacctgcaacaggttcatgggattgagaaatggaagtctgttctcaaccaacctcctcaagctcctat |
283 |
Q |
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| T |
42187953 |
acctcttcagaatctccacctgcaacaggttcatgggattgagaaatggaagtctgttctcaaccaacctcctcaagctcctat |
42188036 |
T |
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Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 341208 - 341048
Alignment:
| Q |
115 |
ccggtattcctcatcccagcagcaatcccgtttacagtgataagcaaagcatctctgagtttaaggttgtcgtcatcacgcctcaacctcttcagaatct |
214 |
Q |
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||||| ||||||||||| |||||||| || || | |||||||| | | ||||||| |||||| || ||||||||||| || |||||||| || |||| |
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| T |
341208 |
ccggtgttcctcatcccggcagcaataccattaatggtgataaggagaacatctcttgctttaagtttatcgtcatcacgtcttaacctcttaagtatct |
341109 |
T |
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| Q |
215 |
ccacctgcaacaggttcatgggattgagaaatggaagtctgttctcaaccaacctcctcaa |
275 |
Q |
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| T |
341108 |
ctacctgcaacatgttcaaggggttgagaaaaggaagtctattttcaatcaacttcctcaa |
341048 |
T |
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