View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_38 (Length: 284)
Name: NF14363_low_38
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 266
Target Start/End: Complemental strand, 36948345 - 36948085
Alignment:
| Q |
6 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaa |
105 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
36948345 |
aatctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaa |
36948246 |
T |
|
| Q |
106 |
gacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataa |
205 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| || || | || ||| | ||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
36948245 |
gacagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataa |
36948146 |
T |
|
| Q |
206 |
tagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgc |
266 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948145 |
tagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacattgc |
36948085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 36956423 - 36956176
Alignment:
| Q |
4 |
aaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagcca |
103 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| | |
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| T |
36956423 |
aaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaa |
36956324 |
T |
|
| Q |
104 |
aagacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaa--caccaatctagttaatccaaatgttgcccaaaagagtatg |
201 |
Q |
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|||| | ||| ||||||| ||||||||||| |||| || || | || |||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
36956323 |
aagataatgaaatgagagcgattccaagaagcggcacaacaattttga--gagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatg |
36956226 |
T |
|
| Q |
202 |
ataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
251 |
Q |
| |
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|| ||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36956225 |
atggtagcactaattgaactgaacaatgatattgtgatgaagataatgaa |
36956176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 37079404 - 37079619
Alignment:
| Q |
36 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaatt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| | |
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| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
136 |
ggcattacgatatcgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattg |
235 |
Q |
| |
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||||| || || | || ||| || ||||||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
236 |
tgatgaagataatgaa |
251 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
37079604 |
tgatgaatataatgaa |
37079619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 37069660 - 37069874
Alignment:
| Q |
52 |
gccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatatcga |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||| | ||||||||| ||||| ||||| | | |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
152 |
gggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
251 |
Q |
| |
|
| ||| || ||||||| ||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
252 |
tgcttgaaacattgc |
266 |
Q |
| |
|
||||| |||||||| |
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|
| T |
37069860 |
agcttggaacattgc |
37069874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 36935572 - 36935308
Alignment:
| Q |
1 |
aacaaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaag |
100 |
Q |
| |
|
||||||||| |||| || |||||||||| ||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaag |
36935473 |
T |
|
| Q |
101 |
ccaaagacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaa-acaccaatctagttaatccaaatgttgcccaaaagagta |
199 |
Q |
| |
|
||||||| | || || |||| ||||||||||| ||||| ||||| | ||| | ||||| || |||| |||||| |||||||||||||||||||||| |
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|
| T |
36935472 |
ccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagag-gtaaagtcagcaattcagttaacccaaatgttgcccaaaagagta |
36935374 |
T |
|
| Q |
200 |
tgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattg |
265 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
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| T |
36935373 |
tgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattg |
36935308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 12493403 - 12493663
Alignment:
| Q |
6 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaa |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||| |
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|
| T |
12493403 |
aatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaa |
12493502 |
T |
|
| Q |
106 |
gacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaa--caccaatctagttaatccaaatgttgcccaaaagagtatgat |
203 |
Q |
| |
|
|| | || ||||||| ||||||||||| ||||| || || | || |||||||| |||||| |||||| |||| ||||||||||||||||||||| |
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| T |
12493503 |
gataacgaaatgagagcgattccaagaagcggcatgaccattttga--gagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgat |
12493600 |
T |
|
| Q |
204 |
aatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgc |
266 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |
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|
| T |
12493601 |
agtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgc |
12493663 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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