View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14363_low_39 (Length: 282)

Name: NF14363_low_39
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14363_low_39
NF14363_low_39
[»] chr8 (11 HSPs)
chr8 (104-262)||(6245387-6245545)
chr8 (104-200)||(9511042-9511136)
chr8 (49-99)||(6243666-6243716)
chr8 (51-99)||(44894463-44894510)
chr8 (49-99)||(3865886-3865935)
chr8 (49-99)||(6244223-6244272)
chr8 (61-99)||(32243883-32243921)
chr8 (61-98)||(32514094-32514131)
chr8 (205-262)||(15439521-15439578)
chr8 (205-262)||(15530825-15530882)
chr8 (49-98)||(42024301-42024349)
[»] chr1 (19 HSPs)
chr1 (104-200)||(5808841-5808935)
chr1 (198-262)||(5808971-5809035)
chr1 (200-253)||(34352815-34352868)
chr1 (200-250)||(13867531-13867581)
chr1 (200-257)||(45795598-45795655)
chr1 (49-99)||(52882359-52882408)
chr1 (49-99)||(12897142-12897191)
chr1 (49-99)||(27551560-27551609)
chr1 (51-99)||(25352151-25352198)
chr1 (49-99)||(12251419-12251468)
chr1 (49-99)||(49767881-49767930)
chr1 (49-99)||(52881783-52881832)
chr1 (62-99)||(11397239-11397276)
chr1 (211-246)||(1248287-1248322)
chr1 (211-246)||(3544803-3544838)
chr1 (50-96)||(2059541-2059586)
chr1 (49-98)||(7565231-7565279)
chr1 (208-261)||(20987563-20987616)
chr1 (108-144)||(26510212-26510248)
[»] chr3 (14 HSPs)
chr3 (198-260)||(34829809-34829871)
chr3 (48-99)||(8575372-8575422)
chr3 (51-99)||(52701358-52701405)
chr3 (49-99)||(33476240-33476289)
chr3 (49-99)||(41927453-41927502)
chr3 (49-99)||(44556686-44556735)
chr3 (49-98)||(8575953-8576001)
chr3 (200-257)||(40513415-40513472)
chr3 (49-96)||(31991262-31991308)
chr3 (48-99)||(31991856-31991906)
chr3 (61-99)||(25232863-25232901)
chr3 (104-146)||(34829679-34829721)
chr3 (49-98)||(45419837-45419885)
chr3 (49-93)||(34995725-34995768)
[»] chr4 (5 HSPs)
chr4 (200-257)||(43516439-43516496)
chr4 (51-99)||(28163776-28163823)
chr4 (49-99)||(44452280-44452329)
chr4 (51-99)||(34513069-34513116)
chr4 (61-98)||(38499494-38499531)
[»] chr2 (8 HSPs)
chr2 (199-260)||(11196742-11196803)
chr2 (49-98)||(3118169-3118216)
chr2 (48-99)||(3118683-3118733)
chr2 (49-99)||(32318412-32318461)
chr2 (104-192)||(11196611-11196697)
chr2 (61-94)||(13027498-13027531)
chr2 (49-98)||(14201016-14201064)
chr2 (205-262)||(18635299-18635356)
[»] chr7 (12 HSPs)
chr7 (51-99)||(38594710-38594757)
chr7 (49-99)||(37107874-37107923)
chr7 (51-96)||(42974161-42974205)
chr7 (51-99)||(8082002-8082049)
chr7 (49-95)||(1065886-1065931)
chr7 (61-99)||(8832915-8832953)
chr7 (61-99)||(12621624-12621662)
chr7 (208-262)||(20349364-20349418)
chr7 (48-98)||(40304369-40304418)
chr7 (49-98)||(7238628-7238676)
chr7 (66-98)||(10463347-10463379)
chr7 (49-93)||(37539981-37540024)
[»] chr6 (4 HSPs)
chr6 (198-266)||(14686690-14686758)
chr6 (61-99)||(21108118-21108156)
chr6 (49-98)||(3914474-3914522)
chr6 (211-246)||(14843839-14843874)
[»] chr5 (9 HSPs)
chr5 (61-99)||(19332667-19332705)
chr5 (61-99)||(43210677-43210715)
chr5 (49-99)||(9168602-9168651)
chr5 (205-262)||(380298-380355)
chr5 (50-98)||(10674837-10674884)
chr5 (211-246)||(476616-476651)
chr5 (49-96)||(9687585-9687631)
chr5 (48-99)||(21837133-21837183)
chr5 (49-98)||(2262845-2262893)
[»] scaffold0024 (1 HSPs)
scaffold0024 (49-98)||(47903-47951)
[»] scaffold0043 (1 HSPs)
scaffold0043 (211-246)||(34311-34346)
[»] scaffold0125 (1 HSPs)
scaffold0125 (48-98)||(21802-21851)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 6245387 - 6245545
Alignment:
Q  104 tctcctcctcccacaccctcgaccttctcctccaaccccacacgcttctccaccaacttccccaccaggatcaaacatatcagctaccgaacacagtaca 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6245387 tctcctcctcccacaccctcaaccttctcctccaaccccacacgtttctccaccaacttccctaccaggatcaaacatatcagctaccgaacacattaca 6245486  T
Q  204 aaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6245487 aaaaggaacatcaccaagccacctatcataccaaaagaaagtactagtgccatccccca 6245545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 9511042 - 9511136
Alignment:
Q  104 tctcctcctcccacaccctcgaccttctcctccaaccccacacgcttctccaccaacttccccaccaggatcaaacatatcagctaccgaacacagt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  9511042 tctcctcctcccacaccctcaaccttctcctccaaccccac--gcttctccaccaacttccccagcaggatcaaacatatcagctactgtacacagt 9511136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 6243666 - 6243716
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6243666 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 6243716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 44894510 - 44894463
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44894510 aattctaaatttt-agtaaacgaacattttgtaatgttctaaacttgta 44894463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 3865886 - 3865935
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  3865886 aaaattctaaagttt-agtaaacgaacctttagtaatgttctaaacttgta 3865935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 6244272 - 6244223
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  6244272 aaaattctaaatttt-agtaaacgaatattttgtaatgttctaaacttgta 6244223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 32243883 - 32243921
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  32243883 ttttagtaaacgaacctttagtaatgttctaaacttgta 32243921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 32514131 - 32514094
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32514131 ttttagtaaacgaaccttttgtaacgttctaaacttgt 32514094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 15439521 - 15439578
Alignment:
Q  205 aaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||| || |||||||| || | |||||||||||||||||  ||||||||||    
T  15439521 aaaggaacatcgcctagccacctatcgtgccaaaagaaagtactagaaccatccccca 15439578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 15530825 - 15530882
Alignment:
Q  205 aaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||| || |||||||| || | |||||||||||||||||  ||||||||||    
T  15530825 aaaggaacatcgcctagccacctatcgtgccaaaagaaagtactagaaccatccccca 15530882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 42024349 - 42024301
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  42024349 aaaattctaaatttt-agtaaacaaacttttggtaatgttctaaacttgt 42024301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 5808841 - 5808935
Alignment:
Q  104 tctcctcctcccacaccctcgaccttctcctccaaccccacacgcttctccaccaacttccccaccaggatcaaacatatcagctaccgaacacagt 200  Q
    |||||||||| ||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  5808841 tctcctcctcgcacacccccaaccttctcctccaaccccac--gcttctccaccaacttccccaccaggatcaaacatattagctatcgtacacagt 5808935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 5808971 - 5809035
Alignment:
Q  198 agtacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  5808971 agtacaaaaaggaacatcaccaagccacctgtcataccaaaagaatgtactaatgccacccccca 5809035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 34352815 - 34352868
Alignment:
Q  200 tacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgc 253  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34352815 tacaaaaaggaacatcaccaagccacctgtcatatcaaaagaaagtactagtgc 34352868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 13867581 - 13867531
Alignment:
Q  200 tacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactag 250  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13867581 tacaaaaaggaacatcaccaagccacctgtcataccaaaagtaagtactag 13867531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 45795598 - 45795655
Alignment:
Q  200 tacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatc 257  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  45795598 tacaaaaaggaacatcacctagccacctgtcataccaaaagtaagtactagagccatc 45795655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 52882408 - 52882359
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52882408 aaaattctaaatttt-agtaaacgaaccttttgtaatgttctaaacttgta 52882359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 12897191 - 12897142
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12897191 aaaattctaaatttc-agtaaacgaaccttttgtaatgttctaaacttgta 12897142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 27551609 - 27551560
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27551609 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaacttgta 27551560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 25352151 - 25352198
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  25352151 aattctaaatttt-agtaaacgaaccttttgtaatgttttaaacttgta 25352198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 12251468 - 12251419
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  12251468 aaaattctaaatttt-agtaaacgaacctttagtaatgttataaacttgta 12251419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 49767881 - 49767930
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  49767881 aaaattctaaatttt-agtaaacgaacctttagtaatgttctagacttgta 49767930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 52881783 - 52881832
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  52881783 aaaattctaaatttt-agtaaacgaatattttgtaatgttctaaacttgta 52881832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 11397239 - 11397276
Alignment:
Q  62 tttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11397239 tttagtaaacgaaccttttgtaatgttctacacttgta 11397276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 1248322 - 1248287
Alignment:
Q  211 acatcaccaagccacctgtcataccaaaagaaagta 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  1248322 acatcaccaagccacctgtcataccaaaagtaagta 1248287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 3544838 - 3544803
Alignment:
Q  211 acatcaccaagccacctgtcataccaaaagaaagta 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  3544838 acatcaccaagccacctgtcataccaaaagtaagta 3544803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 2059541 - 2059586
Alignment:
Q  50 aaattctaaatttttagtaaacgaaccttttgtaatgttctaaactt 96  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||    
T  2059541 aaattctaaatttt-agtaaatgaaccttttataatgttctaaactt 2059586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 7565279 - 7565231
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| |||||| | |||||| ||||||||||||||||||    
T  7565279 aaaattctaaatttt-agtaaatgtacctttcgtaatgttctaaacttgt 7565231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 20987563 - 20987616
Alignment:
Q  208 ggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccc 261  Q
    ||||||||||| | |||| | ||||||||||| ||||||||||| |||||||||    
T  20987563 ggaacatcacctaaccacatatcataccaaaataaagtactagttccatccccc 20987616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 26510248 - 26510212
Alignment:
Q  108 ctcctcccacaccctcgaccttctcctccaaccccac 144  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  26510248 ctcctcccacatcctcaaccttctcctccaaccccac 26510212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 34829809 - 34829871
Alignment:
Q  198 agtacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatcccc 260  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34829809 agtacaaaaagggacatcaccaagccacctgtcataccaaaagaaagtactagtgtcatcccc 34829871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 8575372 - 8575422
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8575372 gaaaattctaaatttt-agtaaacgaaccttttgtaatgttctaaacttgta 8575422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 52701358 - 52701405
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52701358 aattctaaatttt-agtaaacgaaccttttgtaatgttctaaacttgta 52701405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 33476289 - 33476240
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33476289 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaacttgta 33476240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 41927453 - 41927502
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41927453 aaaattctaaatttc-agtaaacgaaccttttgtaatgttctaaacttgta 41927502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 44556735 - 44556686
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  44556735 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaacttgta 44556686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 8576001 - 8575953
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8576001 aaaattctaaatttt-agtaaacgaacctcttgtaatgttctaaacttgt 8575953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 40513472 - 40513415
Alignment:
Q  200 tacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatc 257  Q
    |||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||    
T  40513472 tacagaaaggaacatcacccagccatctgtcataccaaaagtaagtactagagccatc 40513415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 31991262 - 31991308
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaactt 96  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31991262 aaaattctaaatttt-agtaaacaaaccttttgtaatgttctaaactt 31991308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 31991906 - 31991856
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  31991906 gaaaattctaaatttt-agtaaacgatccttttgtaatggtctaaacttgta 31991856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 25232863 - 25232901
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25232863 ttttagtaaacgaaccttttctaatgttctaaacttgta 25232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 34829679 - 34829721
Alignment:
Q  104 tctcctcctcccacaccctcgaccttctcctccaaccccacac 146  Q
    ||||||||||||||| |||| ||||||||||||||||||||||    
T  34829679 tctcctcctcccacagcctcaaccttctcctccaaccccacac 34829721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 45419885 - 45419837
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  45419885 aaaattctaaatttt-agtaaatgaacctttcataatgttctaaacttgt 45419837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 34995725 - 34995768
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaa 93  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||    
T  34995725 aaaattctaaatttt-agtaaatgaaccttttataatgttctaaa 34995768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 43516496 - 43516439
Alignment:
Q  200 tacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatc 257  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  43516496 tacaaaaaggaacatcaccaagccacttgtcataccaaaagtaagtactagagccatc 43516439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 28163823 - 28163776
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28163823 aattctaaatttt-agtaaacgaaccttttgtaatgttctaaacttgta 28163776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 44452280 - 44452329
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  44452280 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaacttgta 44452329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 34513116 - 34513069
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  34513116 aattctaaatttt-agtaaacgaacctcttgtaatgttctaaacttgta 34513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 38499494 - 38499531
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||||||||||||| || |||||||||    
T  38499494 ttttagtaaacgaaccttttgtaatattataaacttgt 38499531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 11196742 - 11196803
Alignment:
Q  199 gtacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatcccc 260  Q
    ||||||||||||  ||||||||||||||| |||| | |||||||||||||||||||||||||    
T  11196742 gtacaaaaaggagtatcaccaagccacctatcatgcaaaaagaaagtactagtgccatcccc 11196803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 3118169 - 3118216
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  3118169 aaaattctaaattt--agtaaacgaaccttttgtaatgttctaaacttgt 3118216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 3118733 - 3118683
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  3118733 gaaaattctaaatttt-agtaaataaaccttttgtaatgttctaaacttgta 3118683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 32318412 - 32318461
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| | ||||||| || ||||||||||||||||||||||    
T  32318412 aaaattctaaatttt-attaaacgagccgtttgtaatgttctaaacttgta 32318461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 11196611 - 11196697
Alignment:
Q  104 tctcctcctcccacaccctcgaccttctcctccaaccccacacgcttctccaccaacttccccaccaggatcaaacatatcagctaccg 192  Q
    |||||||||||||||||||| || ||| ||||||||||  ||||| |||||  |||| |||||||||  | ||| ||||||||| ||||    
T  11196611 tctcctcctcccacaccctcaacattcgcctccaaccc--cacgcctctccgtcaacctccccaccaatagcaaccatatcagccaccg 11196697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 13027531 - 13027498
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaac 94  Q
    |||||||||||||||||||| |||||||||||||    
T  13027531 ttttagtaaacgaaccttttataatgttctaaac 13027498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 14201064 - 14201016
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| | |||| ||||||||||||||||||||| |||||    
T  14201064 aaaattctaaatttt-attaaatgaaccttttgtaatgttctaagcttgt 14201016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 18635299 - 18635356
Alignment:
Q  205 aaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||| || | |||||| |||||||||||||| ||||| || ||||||||||    
T  18635299 aaaggaacatctcctaaccacctatcataccaaaagaatgtacttgttccatccccca 18635356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 38594710 - 38594757
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38594710 aattctaaatttt-agtaaacgaaccttttgtaatgttctaaacttgta 38594757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 37107874 - 37107923
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  37107874 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaacttgta 37107923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 42974205 - 42974161
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaactt 96  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  42974205 aattctaaatttt-agtaaacgaaccttttgtaatgttctaaactt 42974161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 8082002 - 8082049
Alignment:
Q  51 aattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  8082002 aattctaaatttt-agtaaacgaacattttgtaatgttctaaacttgta 8082049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 1065886 - 1065931
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaact 95  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1065886 aaaattctaaatttt-agtaaacgaacctttagtaatgttctaaact 1065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 8832915 - 8832953
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8832915 ttttagtaaatgaaccttttgtaatgttctaaacttgta 8832953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 12621662 - 12621624
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12621662 ttttagtaaacgaacctttagtaatgttctaaacttgta 12621624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 20349364 - 20349418
Alignment:
Q  208 ggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||| | |||||| |||||||||||||||||||||||  |||||||||    
T  20349364 ggaacatcacctaaccacctatcataccaaaagaaagtactagttacatccccca 20349418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 40304418 - 40304369
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    |||||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  40304418 gaaaattcaaaatttt-agtaaacaaactttttgtaatgttctaaacttgt 40304369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 7238676 - 7238628
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  7238676 aaaattctaaatttt-agtaaatgaacctttcataatgttctaaacttgt 7238628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 10463379 - 10463347
Alignment:
Q  66 gtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||||||||||| |||||||||    
T  10463379 gtaaacgaaccttttgtaatgttttaaacttgt 10463347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 37539981 - 37540024
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaa 93  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||    
T  37539981 aaaattctaaatttt-agtaaatgaaccttttgaaatgttctaaa 37540024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 14686758 - 14686690
Alignment:
Q  198 agtacaaaaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatcccccatctt 266  Q
    ||||||||||||   |||||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  14686758 agtacaaaaaggtgtatcaccaagccacctgtcataccaaaagtaagtgctagttccgtcccccatctt 14686690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 21108156 - 21108118
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21108156 ttttagtaaacgaaccttttgtaatgttctaaacttgta 21108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 3914522 - 3914474
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3914522 aaaattctaaatttt-agtaaacgaactttttgtaatgttctaaacttgt 3914474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 14843874 - 14843839
Alignment:
Q  211 acatcaccaagccacctgtcataccaaaagaaagta 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  14843874 acatcaccaagccacctgtcataccaaaagtaagta 14843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 19332667 - 19332705
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19332667 ttttagtaaacgaaccttttgtaatgttctaaacttgta 19332705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 43210715 - 43210677
Alignment:
Q  61 ttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43210715 ttttagtaaacgaaccttttgtaatgttctaaacttgta 43210677  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 9168651 - 9168602
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  9168651 aaaattctaaatttt-agtaaacgagccgtttgtaatgttctaaacttgta 9168602  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 380298 - 380355
Alignment:
Q  205 aaaggaacatcaccaagccacctgtcataccaaaagaaagtactagtgccatccccca 262  Q
    ||||||||||| || ||||||||||| | |||||||||||||||||  ||||||||||    
T  380298 aaaggaacatcgcctagccacctgtcgtgccaaaagaaagtactagaaccatccccca 380355  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 10674837 - 10674884
Alignment:
Q  50 aaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  10674837 aaattctaaatttt-agtaaacgaaccttttgtggtgttctaaacttgt 10674884  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 476616 - 476651
Alignment:
Q  211 acatcaccaagccacctgtcataccaaaagaaagta 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  476616 acatcaccaagccacctgtcataccaaaagtaagta 476651  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 9687631 - 9687585
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaactt 96  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||    
T  9687631 aaaattctaaatttt-agtaaacgaaccttttatagtgttctaaactt 9687585  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 21837133 - 21837183
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgta 99  Q
    |||||||||||||||| |||||| ||||||||| || |||||||||||||||    
T  21837133 gaaaattctaaatttt-agtaaatgaaccttttatagtgttctaaacttgta 21837183  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 2262893 - 2262845
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| ||||||||||  |||| |||||||||||||||||    
T  2262893 aaaattctaaatttt-agtaaacgaagtttttataatgttctaaacttgt 2262845  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 47951 - 47903
Alignment:
Q  49 aaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  47951 aaaattctaaatttt-agaaaacgaacctcttgtaatgttctaaacttgt 47903  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 34346 - 34311
Alignment:
Q  211 acatcaccaagccacctgtcataccaaaagaaagta 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  34346 acatcaccaagccacctgtcataccaaaagtaagta 34311  T

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Target: scaffold0125 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 21851 - 21802
Alignment:
Q  48 gaaaattctaaatttttagtaaacgaaccttttgtaatgttctaaacttgt 98  Q
    |||||||||||||||| |||||| ||||||||| || ||||||||||||||    
T  21851 gaaaattctaaatttt-agtaaatgaaccttttatagtgttctaaacttgt 21802  T

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