View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14363_low_44 (Length: 243)
Name: NF14363_low_44
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_44 |
 | |
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| [»] chr4 (7 HSPs) |
| |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
| |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 14173733 - 14173967
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14173733 |
cacacatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcattt |
14173832 |
T |
|
| Q |
111 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaa |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14173833 |
aactcttcatcagccgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaa |
14173932 |
T |
|
| Q |
209 |
gtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173933 |
gtgtgtgagaggaaaaatagagtgttgagtaaatc |
14173967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 14178487 - 14178721
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14178487 |
cacacatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
14178586 |
T |
|
| Q |
111 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaa |
208 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
14178587 |
aactcttcatcagccgatttcccctataaataaaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaa |
14178686 |
T |
|
| Q |
209 |
gtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178687 |
gtgtgtgagaggaaaaatagagtgttgagtaaatc |
14178721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 44161383 - 44161616
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161383 |
cacacatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
44161482 |
T |
|
| Q |
111 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtg-aaaatacaaagtttctgtgtgtagaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||| ||||||||||||| | |
|
|
| T |
44161483 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagagg |
44161582 |
T |
|
| Q |
210 |
tgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
44161583 |
tgtgtgagaggaataatagagtgttgagtaaatc |
44161616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28607215 - 28607141
Alignment:
| Q |
171 |
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607215 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
28607141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28611977 - 28611903
Alignment:
| Q |
171 |
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611977 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
28611903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 11104427 - 11104499
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11104427 |
tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatc |
11104499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
| Q |
134 |
ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt |
233 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| || ||| |||||| |||||||||| |||||| ||||||||||| ||| | ||| ||||||||| |
|
|
| T |
24726634 |
ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt |
24726535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 15302740 - 15302960
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
110 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15302740 |
cacacatagcttgcagtggagcagtttgaaagcatgacataaaatatagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcattt |
15302839 |
T |
|
| Q |
111 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaa |
208 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
15302840 |
aactcttcatcaactgatttcctctataaatagaggggtacttgaaggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaa |
15302939 |
T |
|
| Q |
209 |
gtgtgtgagaggaaaaataga |
229 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
15302940 |
gtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 15290033 - 15290243
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcattt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
15290033 |
cacacatagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcattt |
15290132 |
T |
|
| Q |
111 |
aactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatac---aaagtttctgtgtgtaga |
207 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
15290133 |
aactcttcatcaactgatttcctctataaatagaggggtacttgaaggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtaga |
15290232 |
T |
|
| Q |
208 |
agtgtgtgaga |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
15290233 |
agtgtgtgaga |
15290243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 37040836 - 37040761
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040836 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
37040761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 12098960 - 12099032
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaat |
242 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
12098960 |
tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaat |
12099032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 12081973 - 12082045
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||||| ||||||| ||||||||||| | ||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
12081973 |
tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatc |
12082045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 29107443 - 29107210
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatatagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatt |
109 |
Q |
| |
|
|||| |||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
29107443 |
cacacatagcttgtggtgaagcagtttgaaaacatgacataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatt |
29107344 |
T |
|
| Q |
110 |
taactcttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaag--tttctgtgtgtaga |
207 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||| | ||||| |||||| |
|
|
| T |
29107343 |
taactcatcatcaactgatttcctctataaataaaggggtacttgaaggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtaga |
29107244 |
T |
|
| Q |
208 |
agtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |
|
|
| T |
29107243 |
agtgtgtgagagaaaaaat--agtgttgagtaaatc |
29107210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 42911513 - 42911324
Alignment:
| Q |
57 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
42911513 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga |
42911415 |
T |
|
| Q |
156 |
aggaatgaaatcaatgaagcagaagtg-aaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||| || |||||||||||| |||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42911414 |
aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatc |
42911324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 42911834 - 42911787
Alignment:
| Q |
11 |
cacagatagcttgcggtggagcagtttgaaagcatgacataaaatata |
58 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42911834 |
cacacatagcttgcgatggagcagtttgaaagcatgacataaaatata |
42911787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 12930631 - 12930706
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930631 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
12930706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 12935377 - 12935452
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935377 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
12935452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 34907094 - 34907169
Alignment:
| Q |
170 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907094 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
34907169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 8539139 - 8539212
Alignment:
| Q |
171 |
gaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaat |
242 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
8539139 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaat |
8539212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 51302118 - 51302191
Alignment:
| Q |
172 |
aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc |
243 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatc |
51302191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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