View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_47 (Length: 236)
Name: NF14363_low_47
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 50707398 - 50707584
Alignment:
| Q |
31 |
attattcttctcttctttcagccgttcttgaactgtcacatgttgaagccttgaggtttcaattgtgtactcatcttgcttccctttttcagtgttgatg |
130 |
Q |
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| T |
50707398 |
attattcttctcttctttcagccgttcttgaattgtctcatgttgaagccttgaggtttcaattgtgtactcatcttgcttccctttttcagtgttgatg |
50707497 |
T |
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| Q |
131 |
actgggttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcatgcatggagatttttgtttggagaagtg |
217 |
Q |
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| T |
50707498 |
actgggttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcatgcatggagatttttgtttggtgaagtg |
50707584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 8167335 - 8167483
Alignment:
| Q |
38 |
ttctcttctttcagccgttcttgaactgtcacatgttgaagccttgaggtttcaattgtgtactcat---cttgcttccctttttcagtgttgatgactg |
134 |
Q |
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| T |
8167335 |
ttctcttctttcagccgttcttcaattgcctcatgttgaaaccttaaggtttcaactacgccctcatgatcctgcttccttttgtcagcgtcgatgactg |
8167434 |
T |
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| Q |
135 |
ggttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggta |
183 |
Q |
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| T |
8167435 |
ggttttccctatcgagaaagtgtttaatgacggtgttagggttagggta |
8167483 |
T |
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