View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_50 (Length: 201)
Name: NF14363_low_50
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 12695638 - 12695472
Alignment:
| Q |
24 |
gacttgattgttgttgttattgttggttaatttctgatccaataagacatgtatgctctgtttgtgcctacacacaacctgattgttcaatgttgcgtga |
123 |
Q |
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| T |
12695638 |
gacttgattgttgttgttattgttggttaatttccgatccaataagacatgtatgctttgtttgtgcctacacacaacctgattgttcaatgttgcgtga |
12695539 |
T |
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| Q |
124 |
ttaacacagtccactgaatactattcacaattcttttgtggtacatgtttgaatatgttatacatga |
190 |
Q |
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| T |
12695538 |
ttaacacagtccactgaatactattcacaattcttttgtggtacatgtttgaatatgttatacatga |
12695472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 12688931 - 12688822
Alignment:
| Q |
31 |
ttgttgttgttattgttggttaatttctgatccaataagacatgtatgctctgtttgtgcctacacacaacctgattgttcaatgttgcgtgattaacac |
130 |
Q |
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|||||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
12688931 |
ttgttgttgtcattgttggttggtttccgatccaataagacatgtatgctttgtttgtgcctccacacaacctgattgttcaatgttgcttgattaacac |
12688832 |
T |
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| Q |
131 |
agtccactga |
140 |
Q |
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| T |
12688831 |
agtccactga |
12688822 |
T |
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