View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_6 (Length: 588)
Name: NF14363_low_6
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 572
Target Start/End: Original strand, 19607473 - 19608028
Alignment:
| Q |
17 |
atagttttcactaataacaaatgatgtcaaggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattgctaaagtttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19607473 |
atagttttcactaataacaaatgatgtcaaggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattgctaaagtttga |
19607572 |
T |
|
| Q |
117 |
agattgcggagagtattgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19607573 |
agattgcggagagtattgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaag |
19607672 |
T |
|
| Q |
217 |
aaggaaatgtaccagataatttgttgtgaaacattattatccctgtcaagtttttgaggcgacaaacttcttccggtatatttccctccaagttgttata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
19607673 |
aaggaaatgtaccagataatttgttgtgaaacattattatccctgtcaagtttttgaggcgacaaacttctttcggaatatttccctccaagttgttata |
19607772 |
T |
|
| Q |
317 |
accaatggaaagtgatattaaggatgaaagattccctataaatgatgaaacacttccagttaacttgttattccgaatatgaagtacttgaagcttttga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19607773 |
accaatggaaagtgatattaaggatgaaagattccctataaatgatgaaacacttccagttaacttgttattccgaatatttagtacttgaagcttttga |
19607872 |
T |
|
| Q |
417 |
agagaggtgatttcaattggaatttttccaatcaaattgttccctctcaagtataagccttcaagatcggaacagtgggtcaagtttataggaatctccc |
516 |
Q |
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| T |
19607873 |
agagaggtgatttcaattgggatttttccaatcaaattgttccctctcaagtataagccttcaagatcggaacagtgggtcaagtttataggaatctccc |
19607972 |
T |
|
| Q |
517 |
ctgagagggtgttattggtcagaaggagttgttgcaattgtaacaaccttccaagt |
572 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
19607973 |
ctgagagggtgttattggtgagaaggagttgttgcaattgtaacaaccttccaagt |
19608028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 10549264 - 10549094
Alignment:
| Q |
147 |
ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaatgtaccagataatttgttgtgaa |
246 |
Q |
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||||| ||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| | |
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| T |
10549264 |
ggaagtgagccatcaaactgatttgatgcagctgagatcatagtaagagatgacatattgtaaagacacaaaggaaatgtaccagatattttgttgacca |
10549165 |
T |
|
| Q |
247 |
acattattatccctgtcaagtttttgaggcgacaaacttcttccggtatatttccctccaagttgttataa |
317 |
Q |
| |
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||||| ||| ||| |||||||||||| ||||| | ||||| || |||| ||||||||| ||||||||| |
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|
| T |
10549164 |
ccattaccatcactgccaagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataa |
10549094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 9837925 - 9838162
Alignment:
| Q |
6 |
tgtccaagaatatagttttcactaataacaaatgatgtcaaggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattg |
105 |
Q |
| |
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||||||| || || |||| ||||||| ||||||||||||| | |||| ||||| ||||||||| || |||| |||| | |||| |||||| || ||| |
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| T |
9837925 |
tgtccaacaaaatggtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagattttattccctcctattt |
9838024 |
T |
|
| Q |
106 |
ctaaagtttcaagattgcggagagtattgaacatgttatga-ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatat |
204 |
Q |
| |
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| |||| | ||||| ||||||| | |||||| || ||| |||||||||||| ||||||||||| |||| | ||| |||| |||||||||||||||| |
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| T |
9838025 |
caaaagatcggagattagggagagtttggaacatatt-tgatggaagagagccactaaagtgattatctgctgttgagatcaatgtaagagatgacatat |
9838123 |
T |
|
| Q |
205 |
tgaaaagacaagaaggaaatgtaccagataatttgttgt |
243 |
Q |
| |
|
|| | ||||||| ||||||||||| |||| |||||||| |
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|
| T |
9838124 |
tgtagagacaaggtggaaatgtacctgatagtttgttgt |
9838162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 10590142 - 10590260
Alignment:
| Q |
124 |
ggagagtattgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaa |
223 |
Q |
| |
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||||||| |||||||| || | |||||||||||| ||||| ||| |||||| |||| ||| ||||||||||||||||| ||||||||||| |||| |
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| T |
10590142 |
ggagagtgttgaacatattgggcggaagagagccactaaagctattcgctgcaactgagatccccgtaagagatgacatattataaagacaagaaagaaa |
10590241 |
T |
|
| Q |
224 |
tgtaccagataatttgttg |
242 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
10590242 |
tgtaccagacaatttgttg |
10590260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 10549004 - 10548938
Alignment:
| Q |
407 |
aagcttttgaagagaggtgatttcaattggaatttttccaatcaaattgttccctctcaagtataag |
473 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
10549004 |
aagcttttgaagagacccaatttcaattggtatttttccaatcaaattgttccctctcaaggataag |
10548938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 7191576 - 7191404
Alignment:
| Q |
47 |
ggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattgctaaagtttcaagattgcggagagtattgaacatgttatga |
146 |
Q |
| |
|
||||||| |||||| ||||||| |||| |||| |||||| | |||||| || || ||||||||| || ||||||| ||| || |||||||| || | |
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|
| T |
7191576 |
ggaagaagcatttgaaatggaaatagggattgtacctgagaattgatttcctccgattgctaaatattgaagattggagagggtgttgaacatattgggt |
7191477 |
T |
|
| Q |
147 |
ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaag |
219 |
Q |
| |
|
|||||||| |||||||| | ||| |||||| || || | |||||||||||||||||| |||||||||||| |
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|
| T |
7191476 |
ggaagagatccattaaaattattgaatgcagcggaaatgaaagtaagagatgacatattataaagacaagaag |
7191404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 10557135 - 10557065
Alignment:
| Q |
403 |
cttgaagcttttgaagagaggtgatttcaattggaatttttccaatcaaattgttccctctcaagtataag |
473 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||| ||||| |
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|
| T |
10557135 |
cttgaagcttttgaagagagcctatttcaattggtatttttccgatcaaattattcccactcaaggataag |
10557065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 10557406 - 10557296
Alignment:
| Q |
132 |
ttgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaatgtaccag |
231 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||||| ||||||| ||| | |||| |||||||||||| ||| ||||||| ||||||| |||||||| |
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|
| T |
10557406 |
ttgaacatgttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaaggaactgtaccag |
10557307 |
T |
|
| Q |
232 |
ataatttgttg |
242 |
Q |
| |
|
||| ||||||| |
|
|
| T |
10557306 |
atagtttgttg |
10557296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 10603254 - 10603129
Alignment:
| Q |
117 |
agattgcggagagtattgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaag |
216 |
Q |
| |
|
|||||| ||||||| | |||||| || | |||||||||||| ||||| ||| ||||| |||| |||| |||||||| |||||| ||||||||| |
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|
| T |
10603254 |
agattggggagagtgtggaacatattgggtggaagagagccactaaagctattcactgcaactgagatcacttgaagagatgtcatattataaagacaag |
10603155 |
T |
|
| Q |
217 |
aaggaaatgtaccagataatttgttg |
242 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
10603154 |
aaggaaatgtaccagacaatttgttg |
10603129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 10599516 - 10599469
Alignment:
| Q |
195 |
gatgacatattgaaaagacaagaaggaaatgtaccagataatttgttg |
242 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10599516 |
gatgacatattataaagacaagaaggaaatgtaccagacaatttgttg |
10599469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 10579501 - 10579383
Alignment:
| Q |
124 |
ggagagtattgaacatgttatgaggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaa |
223 |
Q |
| |
|
||||||| |||||||| || | |||||||| ||| ||||| ||| ||| || |||| ||| ||||||||||||||||| ||||||||||| |||| |
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|
| T |
10579501 |
ggagagtgttgaacatattgggtggaagagaaccactaaagctattcgcttcaactgagatccccgtaagagatgacatattataaagacaagaaagaaa |
10579402 |
T |
|
| Q |
224 |
tgtaccagataatttgttg |
242 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
10579401 |
tgtaccagacaacttgttg |
10579383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 10653981 - 10654027
Alignment:
| Q |
188 |
agtaagagatgacatattgaaaagacaagaaggaaatgtaccagata |
234 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
10653981 |
agtaagagatgacatattataaaaacaagaatgaaatgtaccagata |
10654027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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