View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14363_low_7 (Length: 552)
Name: NF14363_low_7
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 338 - 543
Target Start/End: Original strand, 52255457 - 52255662
Alignment:
| Q |
338 |
ttcattgacccaattcttatgttttcgactaaccacaaaaagataaaaataacgaagacatgtcaccaaagcaacactttaatgattaattacgggtcat |
437 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52255457 |
ttcattgacccaattcttatgtcttcgactaaccacaaaaagataaaaataacgaagacatgtcaccaaagcaacactttaatgattaattacgggtcat |
52255556 |
T |
|
| Q |
438 |
gatgatctaatatctccaccactggcttgacaagaggcatcaaggatttgccacaatctccatgccatccgaagaagcatttgttccttccatcgtttga |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52255557 |
gatgatctaatatctccaccactggcttgacaagaggcatcaaggatttgccacaatctccatgccatccgaagaagcatccgttccttccatcgtttga |
52255656 |
T |
|
| Q |
538 |
tattct |
543 |
Q |
| |
|
|||||| |
|
|
| T |
52255657 |
tattct |
52255662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 52255181 - 52255361
Alignment:
| Q |
152 |
tcaccggtgtcttaccctagaccatccttcattttatatgatcaacattctatatataacttttcccatgctatattttatgactctcctcaagaaaaac |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52255181 |
tcaccggtgtcttaccctagaccaaccttcattttatatgatctacattctatatataacttttcccatgctatattttatgactctcctcaagaaaaac |
52255280 |
T |
|
| Q |
252 |
aattatggtttgattattgtgatcttatgtctattgttaatccctcacggatgtcttaccctggatcatccttcatcttat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52255281 |
aattatggtttgattattgtgatcttatgtctattgttaatccctcacggatgtcttaccctggatcatccttcatcttat |
52255361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 52254832 - 52254978
Alignment:
| Q |
18 |
atgatgtctattaattttaaaattaaaattaataaaatcttatcaacatggtattgaaagagttaacaatacgactcttttcaagaaaaagaatgatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52254832 |
atgatgtctattaattttaaaattaaaattaataaaatcttatcaacatggtattgaaagagttaacaatacgactcttttcaagaaaaagaatgatggt |
52254931 |
T |
|
| Q |
118 |
ttgattcttggagccttatgttattgttaatccttcaccggtgtctt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52254932 |
ttgattcttggagccttatgttattgttaatccttcaccggtgtctt |
52254978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 52255270 - 52255402
Alignment:
| Q |
98 |
tcaagaaaaagaatgatgatttgattcttggagccttatgt-tattgttaatccttcaccggtgtcttaccctagaccatccttcattttatatgatcaa |
196 |
Q |
| |
|
|||||||||| ||| ||| ||||||| ||| ||||||| |||||||||||| |||| | ||||||||||| || |||||||||| |||| ||| | |
|
|
| T |
52255270 |
tcaagaaaaacaattatggtttgattattgtgatcttatgtctattgttaatccctcacggatgtcttaccctggatcatccttcatcttat--gatata |
52255367 |
T |
|
| Q |
197 |
cattctatatataacttttcccatgctatatttta |
231 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |
|
|
| T |
52255368 |
cattctatatataacttttcctatgctatagttta |
52255402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University