View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14363_low_8 (Length: 524)
Name: NF14363_low_8
Description: NF14363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14363_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 14048113 - 14048442
Alignment:
| Q |
1 |
tagacccagaaaaccatgtgttactctcatggaataatcattctgacccttgtagtggaacttttgatggtgtagcttgtaatgaacaaggttttgttac |
100 |
Q |
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| T |
14048113 |
tagacccagaaaaccatgtgttactctcatggaataatcattctgacccttgtagtggaacttttgatggtgtagcttgtaacgaacaaggtcttgttac |
14048212 |
T |
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| Q |
101 |
taatatatcacttcaaggaaaaggtttatctggtgaaataccttcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctctt |
200 |
Q |
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| T |
14048213 |
taatatatcacttcaaggaaaaggtttatctggtgaaataccctcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctctt |
14048312 |
T |
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| Q |
201 |
aatggtattttgcctaaggaaattgctggtttaactcagcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggta |
300 |
Q |
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| T |
14048313 |
aatggtattttgcctaaggaaattgctggtttaactcagcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggta |
14048412 |
T |
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| Q |
301 |
acatgtctaatcttcaaggttggtttctga |
330 |
Q |
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| T |
14048413 |
acatgtctaatcttcaaggttggtttctga |
14048442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 14358143 - 14358472
Alignment:
| Q |
1 |
tagacccagaaaaccatgtgttactctcatggaataatcattctgacccttgtagtggaacttttgatggtgtagcttgtaatgaacaaggttttgttac |
100 |
Q |
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| T |
14358143 |
tagacccagaaaaccatgtgttactctcatggaataatcattctgacccttgtagtggaacttttgatggtgtagcttgtaacgaacaaggtcttgttac |
14358242 |
T |
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| Q |
101 |
taatatatcacttcaaggaaaaggtttatctggtgaaataccttcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctctt |
200 |
Q |
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| T |
14358243 |
taatatatcacttcaaggaaaaggtttatctggtgaaataccctcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctctt |
14358342 |
T |
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| Q |
201 |
aatggtattttgcctaaggaaattgctggtttaactcagcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358343 |
aatggtattttgcctaaggaaattgctggtttaactcagcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggta |
14358442 |
T |
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| Q |
301 |
acatgtctaatcttcaaggttggtttctga |
330 |
Q |
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| T |
14358443 |
acatgtctaatcttcaaggttggtttctga |
14358472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 14048545 - 14048625
Alignment:
| Q |
431 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
511 |
Q |
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| T |
14048545 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
14048625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 431 - 511
Target Start/End: Original strand, 14358575 - 14358655
Alignment:
| Q |
431 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
511 |
Q |
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| T |
14358575 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
14358655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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