View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14364_high_2 (Length: 340)

Name: NF14364_high_2
Description: NF14364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14364_high_2
NF14364_high_2
[»] chr4 (16 HSPs)
chr4 (136-332)||(4026236-4026434)
chr4 (180-333)||(4011525-4011678)
chr4 (171-333)||(4003037-4003199)
chr4 (227-333)||(3811784-3811890)
chr4 (183-270)||(3953269-3953356)
chr4 (204-335)||(4019346-4019477)
chr4 (204-283)||(3962650-3962729)
chr4 (227-330)||(3916167-3916270)
chr4 (227-330)||(3927161-3927264)
chr4 (212-282)||(3805629-3805699)
chr4 (227-333)||(3821357-3821463)
chr4 (204-283)||(3948186-3948265)
chr4 (49-156)||(4002888-4002995)
chr4 (237-333)||(4220605-4220701)
chr4 (112-149)||(3953422-3953459)
chr4 (106-146)||(4011428-4011468)
[»] chr5 (1 HSPs)
chr5 (184-333)||(13398891-13399040)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 136 - 332
Target Start/End: Original strand, 4026236 - 4026434
Alignment:
Q  136 taagcaaatgagcttatgctctatatatgaaa--agtatatagctactagaaaatttatggggaggaaagaactaaccaaaaatctaatgacttaattcc 233  Q
    |||||||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4026236 taagcaaatgagcttatgctctatatataaaacaactatatagctgctagaaaatttatggggaggaaagaactaaccgataatctaatgacttaattcc 4026335  T
Q  234 tgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcataactctt 332  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||| |||  | |||||| ||| ||||||||||    
T  4026336 tgacaagttagcagatttgttcaaagcatatctccatatctgcaccttcaacgaactatgccttttttcaagttcagcaaatgcatttccataactctt 4026434  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 180 - 333
Target Start/End: Original strand, 4011525 - 4011678
Alignment:
Q  180 ctagaaaatttatggggaggaaagaactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcacc 279  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4011525 ctagaaaatttatgggaaggaaagaactaaccgaaaatcagatgacttaattcctgacaaattagcagatgtgttcaaagcatgtctccatatctgcacc 4011624  T
Q  280 ttggacgaactataccttttttcatgtttcgaaaatgctttttcataactcttc 333  Q
    ||||||||| || ||||||||||| |||  | |||||| |||||||||||||||    
T  4011625 ttggacgaattacaccttttttcaagttcagcaaatgcattttcataactcttc 4011678  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 4003037 - 4003199
Alignment:
Q  171 atatagctactagaaaatttatggggaggaaagaactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccat 270  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||     
T  4003037 atatagctactagtaaatttatggggagaaaagaactaaccgaaaatctaatgacttaattccagacaaattagcagatttgttcaaagcgtgtctccag 4003136  T
Q  271 atctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcataactcttc 333  Q
     |||||||||||||| ||  ||| ||||||||| |||  ||||| ||  ||| ||||||||||    
T  4003137 ttctgcaccttggacaaatgatatcttttttcaagttcagaaaacgcacttttataactcttc 4003199  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 3811784 - 3811890
Alignment:
Q  227 taattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcata 326  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||||||  |||||||||||||||||||||||||  |  ||||| ||||||||    
T  3811784 taattcctgacaaattagcagaatttttcaaagcatgtttccatatctgcacctcagacgaactataccttttttcatgttcagcgaatgcattttcata 3811883  T
Q  327 actcttc 333  Q
    |||||||    
T  3811884 actcttc 3811890  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 3953356 - 3953269
Alignment:
Q  183 gaaaatttatggggaggaaagaactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccat 270  Q
    |||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||    
T  3953356 gaaaatttatggagaggaaaaaactaactgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagtttgtctccat 3953269  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 4019346 - 4019477
Alignment:
Q  204 aactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttca 303  Q
    |||| ||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||  || ||||||  | ||| |    
T  4019346 aacttaccgaaaatctgatgacttaattccagataaattagcagatttgttcaaagcatgtctccaaatttgcaccttggtggagctatacactctttga 4019445  T
Q  304 tgtttcgaaaatgctttttcataactcttcat 335  Q
    ||||    |||||| |||||||||||||||||    
T  4019446 tgttcaacaaatgcattttcataactcttcat 4019477  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 3962729 - 3962650
Alignment:
Q  204 aactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttgg 283  Q
    |||| ||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||    
T  3962729 aacttaccgaaaatctgatgacttaattccagataaattagcagatttgttcaaagcatgtctccaaatttgcaccttgg 3962650  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 3916270 - 3916167
Alignment:
Q  227 taattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcata 326  Q
    ||||||||||||||||||||||| | |||||||||||| |||| ||||||||||   | || |||||| ||||||||||||  | |||||| ||||||||    
T  3916270 taattcctgacaaattagcagatattttcaaagcatgtttccacatctgcacctcatatgagctatactttttttcatgttcagcaaatgcattttcata 3916171  T
Q  327 actc 330  Q
    ||||    
T  3916170 actc 3916167  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 3927264 - 3927161
Alignment:
Q  227 taattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcata 326  Q
    ||||||||||||||||||||||| | |||||||||||| |||| || |||||||   | || |||||| ||||||||||||  | |||||| ||||||||    
T  3927264 taattcctgacaaattagcagatgttttcaaagcatgtttccacatgtgcacctcatatgagctatactttttttcatgttcagcaaatgcattttcata 3927165  T
Q  327 actc 330  Q
    ||||    
T  3927164 actc 3927161  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 3805629 - 3805699
Alignment:
Q  212 aaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttg 282  Q
    |||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||| || | |||||||    
T  3805629 aaaaatctgatgacttaattccagataaattagcagatttgttgaaagcatgtctccaaattttcaccttg 3805699  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 3821357 - 3821463
Alignment:
Q  227 taattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcata 326  Q
    ||||||| ||| |||||  |||| | |||||||| | |||||||||||||||||  |||||| ||| | |||||||| |||| |||||||| ||||||||    
T  3821357 taattccagacgaattacaagatattttcaaagcgtctctccatatctgcacctgagacgaattatgcattttttcaagtttagaaaatgcattttcata 3821456  T
Q  327 actcttc 333  Q
    |||||||    
T  3821457 actcttc 3821463  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 3948186 - 3948265
Alignment:
Q  204 aactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttgg 283  Q
    |||| ||| ||||||  ||||||||||||| || |||||||||||||| || |||||||||||||| || ||||||||||    
T  3948186 aacttaccgaaaatccgatgacttaattccagataaattagcagattttttgaaagcatgtctccaaatatgcaccttgg 3948265  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 4002888 - 4002995
Alignment:
Q  49 tactatttaaggaagtaagaaaataaatagtaataaacattcactcttctaataaagagaaaataaaggttatgtcttttttctatttaagcaaatgagc 148  Q
    ||||||||| |||||||  || |||| ||||||  | ||| ||||||  ||| | ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  4002888 tactatttatggaagtagaaatataattagtaagcagcatgcactctagtaaaatagagagaataaaggtaatgtcttttttctatctaagcaaatgagc 4002987  T
Q  149 ttatgctc 156  Q
    ||| ||||    
T  4002988 ttaagctc 4002995  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 4220605 - 4220701
Alignment:
Q  237 caaattagcagatttgttcaaagcatgtctccatatctgcaccttggacgaactataccttttttcatgtttcgaaaatgctttttcataactcttc 333  Q
    ||||||||| ||| | |||||||  |||||||||||||  ||||  || ||| |||||||||||||| ||||   |||||| |||||||||||||||    
T  4220605 caaattagctgatattttcaaagtgtgtctccatatcttaacctcagatgaattataccttttttcaagtttaacaaatgcattttcataactcttc 4220701  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 3953459 - 3953422
Alignment:
Q  112 taaaggttatgtcttttttctatttaagcaaatgagct 149  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  3953459 taaaggttatttcttttttctattgaagcaaatgagct 3953422  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 4011428 - 4011468
Alignment:
Q  106 agaaaataaaggttatgtcttttttctatttaagcaaatga 146  Q
    ||||||||||||||||||| |||| ||||||||| ||||||    
T  4011428 agaaaataaaggttatgtcattttgctatttaagtaaatga 4011468  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 13398891 - 13399040
Alignment:
Q  184 aaaatttatggggaggaaagaactaaccaaaaatctaatgacttaattcctgacaaattagcagatttgttcaaagcatgtctccatatctgcaccttgg 283  Q
    |||||| |||| |||||||||||||||| ||||  | ||||  ||||||| || |||||||||||| | || ||||  | |||||||||||| |||| ||    
T  13398891 aaaattcatggagaggaaagaactaaccgaaaacttgatgatgtaattcccgataaattagcagatatttttaaagtgtttctccatatctgaacctcgg 13398990  T
Q  284 acgaactataccttttttcatgtttcgaaaatgctttttcataactcttc 333  Q
    ||||| ||||||||||| || |||    |||||| |||||||||||||||    
T  13398991 acgaattatacctttttccaagttcaacaaatgcattttcataactcttc 13399040  T

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