View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14365_high_1 (Length: 680)

Name: NF14365_high_1
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14365_high_1
NF14365_high_1
[»] chr3 (29 HSPs)
chr3 (155-680)||(749634-750174)
chr3 (244-680)||(675038-675485)
chr3 (19-251)||(678900-679132)
chr3 (19-147)||(750811-750939)
chr3 (359-680)||(2634006-2634330)
chr3 (484-680)||(2495705-2495906)
chr3 (19-147)||(9564654-9564782)
chr3 (593-680)||(9564387-9564474)
chr3 (531-666)||(2504152-2504286)
chr3 (33-140)||(2632847-2632953)
chr3 (25-124)||(667951-668050)
chr3 (484-655)||(7331830-7332004)
chr3 (246-389)||(2485112-2485259)
chr3 (38-139)||(7317339-7317440)
chr3 (43-139)||(2642522-2642618)
chr3 (569-642)||(2447037-2447109)
chr3 (25-106)||(7339748-7339829)
chr3 (213-274)||(1429705-1429766)
chr3 (336-420)||(2495517-2495597)
chr3 (603-665)||(2641571-2641633)
chr3 (603-665)||(2649064-2649126)
chr3 (46-124)||(2650058-2650136)
chr3 (231-273)||(7332267-7332309)
chr3 (329-403)||(2641879-2641951)
chr3 (329-403)||(2649372-2649444)
chr3 (606-664)||(2485414-2485472)
chr3 (442-483)||(7332018-7332059)
chr3 (331-372)||(7332157-7332198)
chr3 (225-273)||(2642017-2642065)
[»] scaffold0019 (3 HSPs)
scaffold0019 (155-420)||(2001-2270)
scaffold0019 (416-680)||(2296-2570)
scaffold0019 (25-124)||(1456-1554)
[»] chr5 (1 HSPs)
chr5 (37-77)||(2289907-2289947)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 155 - 680
Target Start/End: Complemental strand, 750174 - 749634
Alignment:
Q  155 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttt-gataaccttgatagtat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  750174 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttttgataaccttgatagtat 750075  T
Q  254 gcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttg 353  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750074 gcacaaattcaaattgacaataaccattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttg 749975  T
Q  354 aatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacaca 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  749974 aatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacaca 749875  T
Q  454 cgtaacacattgtacaattcataacat-------------tggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcat 540  Q
    |||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  749874 cgtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcct 749775  T
Q  541 tatattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgttt 639  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  749774 tatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgttt 749675  T
Q  640 gttcatttcaatagaagggtaattcactagctggcttaatt 680  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  749674 gttcatttcaatagaagggtaattcactagctggcttaatt 749634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 244 - 680
Target Start/End: Complemental strand, 675485 - 675038
Alignment:
Q  244 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgatt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  675485 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacagtctacaagataactgatt 675386  T
Q  344 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattctt 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  675385 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaat---t 675289  T
Q  444 cttacacacacgtaacacattgtacaattcataacat-------------tggatatgattgatatagtgcctgagattgtagtgaattttgtttccaca 530  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  675288 cttacacacacgtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccaca 675189  T
Q  531 tgtgttgcattatattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggtt 629  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  675188 tgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggtt 675089  T
Q  630 ggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaatt 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  675088 ggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaatt 675038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 679132 - 678900
Alignment:
Q  19 tatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679132 tatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaa 679033  T
Q  119 tcatattgtacattaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679032 tcatattgtacattaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttac 678933  T
Q  219 gatttgaatcgagattttgataaccttgatagt 251  Q
    |||||||||||||||||||||||||||||||||    
T  678932 gatttgaatcgagattttgataaccttgatagt 678900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 750939 - 750811
Alignment:
Q  19 tatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750939 tatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaa 750840  T
Q  119 tcatattgtacattaagttttatattttg 147  Q
    |||||||||||||||||||||||||||||    
T  750839 tcatattgtacattaagttttatattttg 750811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 359 - 680
Target Start/End: Original strand, 2634006 - 2634330
Alignment:
Q  359 ttaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacacgtaa 458  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||  ||| |||      |   |||||||||||||||||||||   |||  ||||| |    
T  2634006 ttaatgtgaaaatgaaagttttgtatattt-ggtattttatttgcagggggttt------gcttaaatgatattattgaattctt---acatgcacgtca 2634095  T
Q  459 cacattgtacaattcataacattgg-------------atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatat 545  Q
    |||||||||||||||||||||||||             |||| ||||||||| |  ||||||||||| |||| ||  |||||| ||||||||| |||||     
T  2634096 cacattgtacaattcataacattggtgaaatgacctgaatataattgatataatttctgagattgtattgaagttcatttccatatgtgttgccttataa 2634195  T
Q  546 tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcat 645  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |    
T  2634196 tgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagttcaaatgtctctttttcaggctggttgtgtttgttcgt 2634295  T
Q  646 ttcaatagaagggtaattcactagctggcttaatt 680  Q
    |||||||||||||| |||| ||| |||||| ||||    
T  2634296 ttcaatagaagggttattctctatctggctgaatt 2634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 484 - 680
Target Start/End: Original strand, 2495705 - 2495906
Alignment:
Q  484 atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt-----tgcattatattgtctcaatattttaattttgcgtgcacctcaa 578  Q
    ||||||||||||||||| |||||||||||  ||| ||  |||||| ||||||     ||| ||||| |||||||||||||| |||||   ||||||| ||    
T  2495705 atatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacctgaa 2495804  T
Q  579 gcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaa 678  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | || || ||||||| ||    
T  2495805 gcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaagggttactcgctggctggctgaa 2495904  T
Q  679 tt 680  Q
    ||    
T  2495905 tt 2495906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 9564782 - 9564654
Alignment:
Q  19 tatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaa 118  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | || ||| ||||||||||||||||| |||||||||||    
T  9564782 tatagagcttccctccatacatgttagtcataaattttctaaagaaattaacattttattaatttcttgggaactttatgtgttgttaatgctaaattaa 9564683  T
Q  119 tcatattgtacattaagttttatattttg 147  Q
    |||||| ||||| |||||||| |||||||    
T  9564682 tcatatagtacaataagttttttattttg 9564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 593 - 680
Target Start/End: Complemental strand, 9564474 - 9564387
Alignment:
Q  593 ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaatt 680  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  9564474 ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaatt 9564387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 531 - 666
Target Start/End: Original strand, 2504152 - 2504286
Alignment:
Q  531 tgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggtt 629  Q
    |||||||| ||||| ||||||||||||||||||||  |||||||| |||| |||||||| || ||||||| |  |||||||||||||||  |||||||||    
T  2504152 tgtgttgccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggtt 2504249  T
Q  630 ggtcgtgtttgttcatttcaatagaagggtaattcac 666  Q
    ||  |||||||||  ||||||||||||||| ||||||    
T  2504250 ggctgtgtttgtttgtttcaatagaagggttattcac 2504286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 2632847 - 2632953
Alignment:
Q  33 ccatacatgttagtcatcaattttctaaagaaattaacatg-ttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacat 131  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||| | || |||||||||  ||||||| ||||||| |||||||||||||||||||    
T  2632847 ccatacatgttagtcatcaattttttaaacaaattaacatgtttattaatttcttggtaactt--tgtgttgctagtgctgaattaatcatattgtacat 2632944  T
Q  132 taagtttta 140  Q
    | |||||||    
T  2632945 tcagtttta 2632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 668050 - 667951
Alignment:
Q  25 gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat 124  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||| |||||| | || ||| || ||||||||||||||||||| || |||||||||    
T  668050 gcttccctccatacatgttagtcatcaattttctaaacaatttaacattttattaatttcttggcaattttatgtgttgttagtgctgaaataatcatat 667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 484 - 655
Target Start/End: Complemental strand, 7332004 - 7331830
Alignment:
Q  484 atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt--tgcattatattgtctcaatattttaattttgcgtgcacctcaagct 581  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||| ||||||  ||  ||||  |||||||||||| |||||||   ||||||| ||||     
T  7332004 atatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgttgtcttatgatgtctcaatattataattttaattgcaccttaagcc 7331905  T
Q  582 tcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaa 655  Q
    || |||||  |  |||||||| ||||||| |||||||||||||||||||||  |||||||||  |||||||||||    
T  7331904 tcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa 7331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 389
Target Start/End: Original strand, 2485112 - 2485259
Alignment:
Q  246 gatagtatgcacaaattcaaattgacaataaacat---taaagtttttatgttttagct-tttgtttgtgatagtgggtaacggtctacaagataactga 341  Q
    |||||||| |||||||||||||||||||||| | |   || ||||||| ||||||| || |||  || ||||||||  ||| ||  ||||||||||||||    
T  2485112 gatagtattcacaaattcaaattgacaataaccttggctacagtttttttgttttatctctttccttttgatagtgtttaatggattacaagataactga 2485211  T
Q  342 ttattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt 389  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||    
T  2485212 ttattcttgttgaatgtttaatgcaaaaatgaaagttttgtatatttt 2485259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 7317440 - 7317339
Alignment:
Q  38 catgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtt 137  Q
    |||||||||||||||| |||||||||| |||||||||||||| | || ||| |||||||||||||  ||||||| || ||||||||| ||| ||| ||||    
T  7317440 catgttagtcatcaatcttctaaagaatttaacatgttattaatttcttggcaactttatgtgtttctagtgctgaaataatcatatagtatattcagtt 7317341  T
Q  138 tt 139  Q
    ||    
T  7317340 tt 7317339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 2642618 - 2642522
Alignment:
Q  43 tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttt 139  Q
    ||||||| | ||||||||||||||||||||||||||| | || ||||||||||||   ||| ||||||| |||||||||||| ||||||| ||||||    
T  2642618 tagtcattagttttctaaagaaattaacatgttattaatttcttggtaactttattccttgctagtgctgaattaatcatatagtacattcagtttt 2642522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 642
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
Q  569 tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt 642  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||    
T  2447037 tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt 2447109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 7339829 - 7339748
Alignment:
Q  25 gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtta 106  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| | || |  ||||||||||||||||||    
T  7339829 gcttccctccatacatattagtcatcaattttctaaagaaagtaacattttattaatttcttattaactttatgtgttgtta 7339748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 1429766 - 1429705
Alignment:
Q  213 tcttacgatttgaatcgagattttgataaccttgatagtatgcacaaattcaaattgacaat 274  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||||||||||||||||||||||    
T  1429766 tcttacgatttaaatcgtgattttgaaaaccttgatatcatgcacaaattcaaattgacaat 1429705  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 2495517 - 2495597
Alignment:
Q  336 aactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 420  Q
    |||||||||||||||   ||||||||||||||||| |||||||||| ||||||| |  |||||||||| || |||||||||||||    
T  2495517 aactgattattcttg---aatgattaatgtgaaaacgaaagttttgtatattttagacttttatttgc-agtgttttaaagttgt 2495597  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 665
Target Start/End: Complemental strand, 2641633 - 2641571
Alignment:
Q  603 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca 665  Q
    ||||||| |||||||||||||||||||||  |||||||||  ||||||| ||||||| |||||    
T  2641633 atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca 2641571  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 665
Target Start/End: Complemental strand, 2649126 - 2649064
Alignment:
Q  603 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca 665  Q
    ||||||| |||||||||||||||||||||  |||||||||  ||||||| ||||||| |||||    
T  2649126 atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca 2649064  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 2650136 - 2650058
Alignment:
Q  46 tcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat 124  Q
    ||||||||||||||||||| || ||||||||||| | || |||||||||||||  ||| | ||||| |||| |||||||    
T  2650136 tcatcaattttctaaagaagtttacatgttattaatttcttggtaactttatgccttgctggtgcttaatttatcatat 2650058  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 7332309 - 7332267
Alignment:
Q  231 gattttgataaccttgatagtatgcacaaattcaaattgacaa 273  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  7332309 gattttggtaaccttgatagtatgcactaattcaaattgacaa 7332267  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 2641951 - 2641879
Alignment:
Q  329 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 403  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2641951 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2641879  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 2649444 - 2649372
Alignment:
Q  329 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 403  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2649444 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2649372  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 664
Target Start/End: Original strand, 2485414 - 2485472
Alignment:
Q  606 gttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattc 664  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||| | ||||||| ||||    
T  2485414 gttgaaatgtcactttttcaggttgattgtgtttgttcgtttcagttgaagggttattc 2485472  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 7332059 - 7332018
Alignment:
Q  442 ttcttacacacacgtaacacattgtacaattcataacattgg 483  Q
    |||||||||||||| |||||||||||| ||||||||| ||||    
T  7332059 ttcttacacacacgcaacacattgtacgattcataactttgg 7332018  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 7332198 - 7332157
Alignment:
Q  331 aagataactgattattcttgttgaatgattaatgtgaaaatg 372  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  7332198 aagataactgtttattcttgttaaatgattaatctgaaaatg 7332157  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 2642065 - 2642017
Alignment:
Q  225 aatcgagattttgataaccttgatagtatgcacaaattcaaattgacaa 273  Q
    ||||| |||||||||||| ||||| ||||||||  ||||||||||||||    
T  2642065 aatcgtgattttgataacattgattgtatgcactgattcaaattgacaa 2642017  T

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Target: scaffold0019 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 155 - 420
Target Start/End: Original strand, 2001 - 2270
Alignment:
Q  155 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagtatg 254  Q
    |||| |||||| |||| |||||  |||| | ||||| ||||| ||||||||| || |||||||| |||| ||||| || |||||||||| ||||||||||    
T  2001 tttcacagcaaatgattttgtattggatctattgtgggggaccattaagatcgcatgatcttacaatttaaatcgtgactttgataaccctgatagtatg 2100  T
Q  255 cacaaattcaaattgacaataaacat--taaagttttt-atgttttagcttttgtttgt-gatagtgggtaacggtctacaagataactgattattcttg 350  Q
    |||| |||||| || ||||| | |||  ||  |||||| ||||||||||| ||| || | |||||||  ||| ||  |||||||||||||||||||||||    
T  2101 cacagattcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattacaagataactgattattcttg 2200  T
Q  351 ttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 420  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  2201 ttgaatgattaatgtcaaaatgaaagttttgtatattttggtcttttatttgcaagggttttaaagttgt 2270  T

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Target: scaffold0019; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 416 - 680
Target Start/End: Original strand, 2296 - 2570
Alignment:
Q  416 gttgtgaaaatgatattattgaattcttcttacacacacgtaacacattgtacaattcataacattgg-------------atatgattgatatagtgcc 502  Q
    |||||| |||||||||||||||||||||   ||||||| | |||||| ||||||||||||||||||||             |||| |||||| || || |    
T  2296 gttgtgtaaatgatattattgaattctt---acacacatgcaacacagtgtacaattcataacattggtaaaatgacctgaatataattgatttattgtc 2392  T
Q  503 tgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttc 602  Q
    | ||||| ||||||| ||  |||||| || |||||| ||| | ||||||||||||||||| ||   |||||||||| | |||||||||||||||||| ||    
T  2393 ttagattatagtgaagttcatttccatatatgttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc 2492  T
Q  603 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaatt 680  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| ||||    
T  2493 atagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaatt 2570  T

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Target: scaffold0019; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 1456 - 1554
Alignment:
Q  25 gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat 124  Q
    ||||||| | |||| ||||||| ||||||||||||||||| ||||||| |||||| | || ||||||||| || |||| ||| |||  ||||||||||||    
T  1456 gcttccctctatacctgttagtaatcaattttctaaagaatttaacatattattaatttcttggtaacttcatatgtt-ttattgcggaattaatcatat 1554  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2289947 - 2289907
Alignment:
Q  37 acatgttagtcatcaattttctaaagaaattaacatgttat 77  Q
    |||||||||| || |||||||||||||||||||||| ||||    
T  2289947 acatgttagtaattaattttctaaagaaattaacatattat 2289907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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