View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_high_11 (Length: 243)
Name: NF14365_high_11
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 4475547 - 4475707
Alignment:
| Q |
70 |
ggtaataaaagagtaaaa--gtagtgtgtgttatttttggcgtgtgtgatagggaagttgttgtgagaagaaagggtcttagaagtggttgaaggtcgat |
167 |
Q |
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| T |
4475547 |
ggtaataaaagagtaaaaaagtagtgtgtgttatttttggcgtgtgtgatagggaagttgttgtgagaagaaagggtcttagaagtggttgaaggtcgat |
4475646 |
T |
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| Q |
168 |
accaatagttgtgtttcattcaattagagcctactttttagtttattgatgccggcctttg |
228 |
Q |
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| T |
4475647 |
accaatagttgtgtttcattcaattagagcctactttttagtttattgatgccggcctttg |
4475707 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 4475493 - 4475528
Alignment:
| Q |
33 |
agagagaagacttttttaggagaatgaacaaggaag |
68 |
Q |
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| T |
4475493 |
agagagaagacttttttaggagaattaacaaggaag |
4475528 |
T |
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