View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_low_11 (Length: 353)
Name: NF14365_low_11
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 339
Target Start/End: Complemental strand, 34398751 - 34398414
Alignment:
| Q |
4 |
ggtaattctctaattgattttttggatttatcaattttatccgaacagtttaaacgcccaagttattcaaaattaga--ttaacaaaaattgattaagaa |
101 |
Q |
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| T |
34398751 |
ggtaattctctatttgaccttttggatttatcaattttatccgaacagtttacacgcccaagttattcaaaattagagattaacaaaaattgattaagaa |
34398652 |
T |
|
| Q |
102 |
ttattctgcctaaaaatcaaactctaattctcctaaactattcgtgatttgatggaagaattaacctaaattgattgttccattttctgcaatgatataa |
201 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34398651 |
ttattctgcttaaaaatcaaactcgaattctcctaaattattcgtgatttgatggaagaattaacctaaattgattgttccattttctgcaatgatataa |
34398552 |
T |
|
| Q |
202 |
cgaatgcaaaacaactgaaattaaggaccatgtaacgtctaaaagtggacaaacaatttgaatgaaatcctcatgtggtaggaacataattaaatctctt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34398551 |
cgaatgcaaaacaactgaaattaaggaccatgtaacgtctaaaagtgtacaaacaatttgaatgaaatcctcatgtggtaggaacataattaaatctctt |
34398452 |
T |
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| Q |
302 |
tggtacccactgattgcctattttcaattgatatatat |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34398451 |
tggtacccactgattgcctattttcaattgatatatat |
34398414 |
T |
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