View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_low_2 (Length: 534)
Name: NF14365_low_2
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 28754084 - 28753568
Alignment:
| Q |
18 |
catccttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatattttgggg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754084 |
catccttggtggcctggtcagatctatgatcccttggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatattttgggg |
28753985 |
T |
|
| Q |
118 |
atcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatggaaaatttccgccatgc |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28753984 |
atcaaacatttgcttggaatgacacgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgatatggaaaatttccgccatgc |
28753885 |
T |
|
| Q |
218 |
cgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctgagctgaaaaagaaagta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
28753884 |
cgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgcctggagaaacgtatcctgagctgaaaacgaaagta |
28753785 |
T |
|
| Q |
318 |
attgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatttgatagattggattttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753784 |
attgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatttgatagattggattttg |
28753685 |
T |
|
| Q |
418 |
taagtgcatgtgctcgattgtcagctttctatcgatcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttgtttgagaaggatatgga |
517 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28753684 |
taagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttgtttgagaatgatatgga |
28753585 |
T |
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| Q |
518 |
aattctacttgtaaggg |
534 |
Q |
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||||||||||||||||| |
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| T |
28753584 |
aattctacttgtaaggg |
28753568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 44864717 - 44865222
Alignment:
| Q |
18 |
catccttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatattttgggg |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| || ||| ||||||||| ||||||||||||||||||||||| | |
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| T |
44864717 |
catccttggtggcctggtcagatctatgatccctccgttgcatcagagaaggcaaggatgcactttaaggaaaattgttacctgatagcatattttggtg |
44864816 |
T |
|
| Q |
118 |
atcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatggaaaatttccgccatgc |
217 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||||||| ||||| |
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| T |
44864817 |
atcaaacatttgcttggaatgatgtgtcagtgataaagccatttcataaacatttcaccgaaatgaagaaacagaatgatttggaaaatttccgtcatgc |
44864916 |
T |
|
| Q |
218 |
cgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctgagctgaaaaagaaagta |
317 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||| | |||||| || |||| ||||| | | | || || |
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| T |
44864917 |
tgttgattgtgctttagaagaagcctcaagacgcgttgaatttggcctttcttgtccttgtatgaccggagaagtgtctcctaagctggagacgcaatta |
44865016 |
T |
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| Q |
318 |
attgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatttgatagattggattttg |
417 |
Q |
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| ||||| |||||||||||||||||| | | |||||||||||||||| ||||| ||||| || || ||||||||||||||||||||| | || |||| |
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| T |
44865017 |
acggctaatgctgcggcatcttttgaacctacgcaacttgtcaattttgtcaaatcattagctcagtcaccacttactgaatttgatagactcgagtttg |
44865116 |
T |
|
| Q |
418 |
taagtgcatgtgctcgattgtcagctttctatcgatcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttgtttgagaaggatatgga |
517 |
Q |
| |
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||||| | |||| | |||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
44865117 |
taagttctcgtgcccaattgtcggctttctatcgctcaaaaggctattctcaactgcctgagtttgcaatgcttgatcggttgtttgagagtgatatgga |
44865216 |
T |
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| Q |
518 |
aattct |
523 |
Q |
| |
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|||||| |
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| T |
44865217 |
aattct |
44865222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 45247855 - 45247350
Alignment:
| Q |
17 |
acatccttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatattttggg |
116 |
Q |
| |
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|||| ||||||||||||||||||| |||| |||||| |||||||| | ||| || |||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
45247855 |
acattcttggtggcctggtcagatatatgttccctcagttgcatcagtgaaggcgaagaggcactgtaagggaaactgttacctgatagcatattttggt |
45247756 |
T |
|
| Q |
117 |
gatcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatggaaaatttccgccatg |
216 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||| || || || |||||||||||| |
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| T |
45247755 |
gatcaaacatttgcttggaatgatgtgtcaatgataaagccatttcataaacatttctcccaaatggagaaacagagcgatttgaaacatttccgccatg |
45247656 |
T |
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| Q |
217 |
ccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctgagctgaaaaagaaagt |
316 |
Q |
| |
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| |||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||| ||| || || |||| || | |
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| T |
45247655 |
ctgttgattgtgctttagaagaggcctccaggcacgttgagtttggcctgtcttgtccttgtatgcccggacaagcgcttcct------------aagtt |
45247568 |
T |
|
| Q |
317 |
aattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatttgatagattggatttt |
416 |
Q |
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|| |||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || || ||||||||||||||||||| | || ||| |
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| T |
45247567 |
aaatgctaatgatgcgacatcttttgaaccgacggaacttgtcaattttgttaaatcattagctcagtcctaacttactgaatttgatagactcgagttt |
45247468 |
T |
|
| Q |
417 |
gtaagtgcatgtgctcgattgtcagctttctatcgatcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttgtttgagaaggatatgg |
516 |
Q |
| |
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|||||||| |||| | |||||| || |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
45247467 |
gtaagtgctcgtgcccaattgtcggccttctatcgctcaaaaggctgttctcaactgcctgagtttgcaatgcttgatcggttgtttgagaatgatatgg |
45247368 |
T |
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| Q |
517 |
aaattctacttgtaaggg |
534 |
Q |
| |
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||||||||| || ||||| |
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| T |
45247367 |
aaattctacctgaaaggg |
45247350 |
T |
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