View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_low_5 (Length: 474)
Name: NF14365_low_5
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Original strand, 22464749 - 22465206
Alignment:
| Q |
6 |
agagatgaagctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaatggttgaattttggttaat |
105 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22464749 |
agagatgaaactagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaatggttgaattttggttaat |
22464848 |
T |
|
| Q |
106 |
agatgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttaggatcaatacgtgttggagaattttctaca |
205 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22464849 |
agatgaaccttgaatcaaagacattaacatctcatattgctcatgtgtgatagctgatacactagctttagaatcaatacgtgttggagaattttctaca |
22464948 |
T |
|
| Q |
206 |
tgattatcatccttctttgcagatgtaaaatgattaacatatgcttaattatagtttacctgaa---gaggtggaactccaagcttctcatatcatgttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
22464949 |
tgattatcatccttctttgcagatgtaaaatgattaacatatgcttaattatagtttacctgaagatgaggtggaactccaagcttctcatagcatgttt |
22465048 |
T |
|
| Q |
303 |
caacaatatgattattcctcctacaaaaggtgcatacacgaatgacattcttggaattagaaccttgaggataaaactttccagaattgtctccctaaaa |
402 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22465049 |
caacaatatgattattcctcccacaaaaggtgcatacacgaatgacattcttggaattagaaccttgaggataaaactttccagaattgtctcccttaaa |
22465148 |
T |
|
| Q |
403 |
ctttctagaatcagtaacattaataaaaactgaatcatccttgacaagagcaaaatgt |
460 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22465149 |
ctttctagaatcagtaacattaataaaaactgaatcatccttgacaagagcaaaatgt |
22465206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 31036030 - 31036233
Alignment:
| Q |
16 |
ctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaa--tggttgaattttggttaatagatgaac |
113 |
Q |
| |
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||||||||||| || |||||||||||||||||| || ||||| ||| ||| || |||||||||||||||| ||| |||| |||| ||| | |
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| T |
31036030 |
ctagtaccttgtctgtcagatggtgaaagaccagcagacatggaagaagaaacctgattagaagcatgcacattggctgaactttgatta---------c |
31036120 |
T |
|
| Q |
114 |
cttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttaggatcaatacgtgttggagaattttctacatgattatc |
213 |
Q |
| |
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||| |||||||||||||| ||||| ||||||||||||||||| | | ||||||| ||||| |||||| || || |||||| ||| ||||| ||||| | |
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| T |
31036121 |
cttaaatcaaagacattagcttctagtattgctcatgtgtgattgacggtacactaactttatgatcaacacatgctggagagtttactacaggattagc |
31036220 |
T |
|
| Q |
214 |
atccttctttgca |
226 |
Q |
| |
|
||||| ||||||| |
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|
| T |
31036221 |
atcctcctttgca |
31036233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 2985442 - 2985274
Alignment:
| Q |
10 |
atgaagctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatg--caatggttgaattttggttaatag |
107 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||| | | ||| | | ||| || |||||||||||||| ||| ||||| ||| | || || |
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| T |
2985442 |
atgaaactagtaccttgcctgtcagatggtgaatgaccaagagagatggaggaagaaacctgattagaagcatgtacaacatttgaaccttgataaagag |
2985343 |
T |
|
| Q |
108 |
atgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttag |
176 |
Q |
| |
|
||||| |||| ||| |||| ||||| |||||||||||||||||||||||||| | | ||||||||| |
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|
| T |
2985342 |
atgaattctgaagtaaatacatcaacttttcatattgctcatgtgtgatagctgaaatagtagctttag |
2985274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 19473752 - 19473807
Alignment:
| Q |
106 |
agatgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctg |
161 |
Q |
| |
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|||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||| |
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|
| T |
19473752 |
agatgaactttgaagtaaagacattaacctctcattttgcttatgtgtgatagctg |
19473807 |
T |
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