View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14365_low_6 (Length: 474)

Name: NF14365_low_6
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14365_low_6
NF14365_low_6
[»] chr3 (12 HSPs)
chr3 (10-474)||(33006809-33007268)
chr3 (27-137)||(25365465-25365580)
chr3 (27-77)||(52369778-52369828)
chr3 (29-77)||(21211293-21211341)
chr3 (32-78)||(7928458-7928504)
chr3 (32-78)||(8039840-8039886)
chr3 (32-78)||(17005624-17005670)
chr3 (29-114)||(24205005-24205095)
chr3 (29-77)||(12704663-12704711)
chr3 (30-78)||(20691325-20691373)
chr3 (23-75)||(25948895-25948947)
chr3 (30-70)||(27097072-27097112)
[»] chr4 (11 HSPs)
chr4 (29-77)||(24343512-24343560)
chr4 (72-137)||(18513176-18513241)
chr4 (30-81)||(14465296-14465347)
chr4 (30-77)||(19230315-19230362)
chr4 (29-75)||(20743286-20743332)
chr4 (29-75)||(32910556-32910602)
chr4 (32-82)||(40613458-40613508)
chr4 (32-78)||(54580028-54580074)
chr4 (31-76)||(31243555-31243600)
chr4 (30-78)||(7727964-7728012)
chr4 (32-76)||(14126118-14126162)
[»] chr5 (11 HSPs)
chr5 (30-77)||(5467984-5468031)
chr5 (32-78)||(28588679-28588725)
chr5 (22-77)||(18586295-18586349)
chr5 (27-77)||(18607103-18607153)
chr5 (32-78)||(36838551-36838597)
chr5 (32-70)||(40131629-40131667)
chr5 (32-77)||(23015995-23016040)
chr5 (30-78)||(2548393-2548441)
chr5 (30-78)||(24906306-24906354)
chr5 (32-68)||(27932243-27932279)
chr5 (32-68)||(43001808-43001844)
[»] chr7 (12 HSPs)
chr7 (29-75)||(5938477-5938523)
chr7 (31-78)||(15902829-15902876)
chr7 (30-77)||(18233604-18233651)
chr7 (32-75)||(30813820-30813863)
chr7 (32-78)||(21880160-21880206)
chr7 (32-78)||(27732244-27732290)
chr7 (32-78)||(27945049-27945095)
chr7 (32-77)||(11665446-11665491)
chr7 (32-76)||(18013081-18013125)
chr7 (33-77)||(19930947-19930991)
chr7 (29-77)||(23751905-23751953)
chr7 (29-77)||(43249998-43250046)
[»] chr6 (12 HSPs)
chr6 (30-75)||(7569176-7569221)
chr6 (32-70)||(1532248-1532286)
chr6 (32-81)||(17341666-17341715)
chr6 (29-77)||(12086351-12086399)
chr6 (29-77)||(34446570-34446618)
chr6 (32-78)||(7265598-7265644)
chr6 (32-78)||(7977835-7977881)
chr6 (32-78)||(9025499-9025545)
chr6 (29-77)||(12235525-12235573)
chr6 (32-68)||(12696332-12696368)
chr6 (32-76)||(19040360-19040404)
chr6 (32-80)||(30866147-30866195)
[»] chr8 (11 HSPs)
chr8 (32-78)||(11927091-11927137)
chr8 (32-76)||(3025559-3025603)
chr8 (29-115)||(30067991-30068082)
chr8 (32-70)||(7658471-7658509)
chr8 (32-78)||(11944673-11944719)
chr8 (32-70)||(13203649-13203687)
chr8 (32-77)||(34897093-34897138)
chr8 (32-68)||(7442853-7442889)
chr8 (32-84)||(8798830-8798882)
chr8 (32-84)||(27213555-27213607)
chr8 (29-77)||(44067521-44067569)
[»] chr1 (20 HSPs)
chr1 (32-78)||(36878469-36878515)
chr1 (32-76)||(398772-398816)
chr1 (29-77)||(22794084-22794132)
chr1 (30-77)||(24176373-24176420)
chr1 (29-76)||(40747780-40747827)
chr1 (32-78)||(1486714-1486760)
chr1 (32-78)||(1864885-1864931)
chr1 (32-78)||(6612176-6612222)
chr1 (32-78)||(9828052-9828098)
chr1 (32-70)||(28674808-28674846)
chr1 (32-82)||(31015051-31015101)
chr1 (31-77)||(39101188-39101234)
chr1 (32-61)||(2851029-2851058)
chr1 (32-77)||(8010293-8010338)
chr1 (30-75)||(17425101-17425146)
chr1 (32-77)||(18190114-18190159)
chr1 (32-85)||(34298444-34298497)
chr1 (32-76)||(7918218-7918262)
chr1 (32-76)||(17754319-17754363)
chr1 (34-78)||(44482240-44482284)
[»] chr2 (12 HSPs)
chr2 (23-78)||(34006996-34007051)
chr2 (32-78)||(12668428-12668474)
chr2 (32-70)||(23921261-23921299)
chr2 (32-78)||(34691810-34691856)
chr2 (32-78)||(34714222-34714268)
chr2 (32-78)||(42832281-42832327)
chr2 (32-69)||(28412358-28412395)
chr2 (27-75)||(12748687-12748735)
chr2 (30-74)||(19573984-19574028)
chr2 (32-68)||(21374714-21374750)
chr2 (32-76)||(27286299-27286343)
chr2 (32-68)||(39323272-39323308)
[»] scaffold0361 (1 HSPs)
scaffold0361 (32-137)||(14538-14645)
[»] scaffold0050 (1 HSPs)
scaffold0050 (32-78)||(70286-70332)
[»] scaffold0044 (1 HSPs)
scaffold0044 (33-78)||(53189-53234)
[»] scaffold1528 (1 HSPs)
scaffold1528 (32-76)||(1043-1087)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-68)||(92815-92851)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Original strand, 33006809 - 33007268
Alignment:
Q  10 gacatcatcatatcgatatggataataatttgataaaattacataattcagtttaattataggtgtcggacaccgacgtgagtccgacactatgacacgc 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||     
T  33006809 gacatcaacatatcgatatggataataatttgataaaattacataattcagtttaatcgtaggtgtcggacaccgacgtgagtctgacactatgacacgt 33006908  T
Q  110 ctaatctaagaaatgtatgtgcttcata-------acaatctggaccttgagccattgatttttagaaggtaccaagcatggtatcaaatagaaacatct 202  Q
    ||||||| || |||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33006909 ctaatctgaggaatgtatgtgcttcatagactgtcacaatctggaccttgacccattgatttttagaaggtaccaagcatggtatcaaatagaaacatct 33007008  T
Q  203 cgacttaggaacaggggtgtgttaactcggggactaaattgttattctatttaaaatttgagggcctattttgccaataagtgaatgatttaagggtctg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007009 cgacttaggaacaggggtgtgttaactcggggactaaattgttattctatttaaaatttgagggcctattttgccaataagtgaatgatttaagggtctg 33007108  T
Q  303 aattgaaatattttattttgaattttgcctgaaaagacatatgaactttgggatcagttgtctaccttaatgtttttggtgcaaggccaccaccaattca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                
T  33007109 aattgaaatattttattttgaattttgcctgaaaagacatatgaactttgggatcagttgtctaccttaatgtgtttggtgcaaggcc------------ 33007196  T
Q  403 accacctataagagcactagcactcatgagtcatgagaggacctgaacaaaattgtgggaagaaactcataa 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33007197 accacctataagagcactagcactcatgagtcatgagaggacctgaacaaaattgtgagaagaaactcataa 33007268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 25365465 - 25365580
Alignment:
Q  27 atggataataatttgataaaattacataattcagtttaattata-----ggtgtcggacaccgacgtgagtccgacactatgacacgcctaatctaagaa 121  Q
    |||||||||||||||| || || ||||||||| || |||| |||      |||||||||||||| ||| || |||||| | |||||||||||||| || |    
T  25365465 atggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccgatgtgtgttcgacaccaggacacgcctaatctgagga 25365564  T
Q  122 atgtatgtgcttcata 137  Q
    ||||||||||||||||    
T  25365565 atgtatgtgcttcata 25365580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 52369778 - 52369828
Alignment:
Q  27 atggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||||| |||||||||||||||| | |||| ||||||||||    
T  52369778 atggataataatttgagaaaattacataattcaatgtaatcataggtgtcg 52369828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 21211293 - 21211341
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||||||||| |||||| ||||||| |||||||    
T  21211293 ggataataatttgagaaaattacatagttcagtgtaattatgggtgtcg 21211341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 7928458 - 7928504
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  7928458 taataatttgaaaaaatcacataattcagtgtaattatatgtgtcgg 7928504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 8039886 - 8039840
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcgg 8039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 17005670 - 17005624
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| | |||||||||| |||||||| |||||||    
T  17005670 taataatttgataaaatcatataattcagtgtaattataagtgtcgg 17005624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 24205095 - 24205005
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattata-----ggtgtcggacaccgacgtgagtccgacactatgacacgcctaat 114  Q
    |||||||||||||| ||||| ||||||| |||| ||||||||      ||||||||||| |||| | ||||||||| | ||||||||||||    
T  24205095 ggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaat 24205005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 12704711 - 12704663
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||| |||||||||| | |||| ||||||||||    
T  12704711 ggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcg 12704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 20691325 - 20691373
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||| ||||| |||||||||||| |||| ||| |||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcgg 20691373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 25948947 - 25948895
Alignment:
Q  23 cgatatggataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    ||||| || ||||||||||| ||||| |||||||||||| |||||||| ||||    
T  25948947 cgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgt 25948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 27097112 - 27097072
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattata 70  Q
    |||| |||||||| |||||||||||||||| ||||||||||    
T  27097112 gatagtaatttgagaaaattacataattcaatttaattata 27097072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 24343512 - 24343560
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24343512 ggataataatttgagaaaattacataattcagtgtaattataggtgtcg 24343560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 18513241 - 18513176
Alignment:
Q  72 gtgtcggacaccgacgtgagtccgacactatgacacgcctaatctaagaaatgtatgtgcttcata 137  Q
    |||||||||||||||||| ||||||||| | |||||||||||||| || | |||  ||||||||||    
T  18513241 gtgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 14465347 - 14465296
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcggaca 81  Q
    ||||||||||||| ||||| |||||||||| |||||| ||| ||||||||||    
T  14465347 gataataatttgagaaaatgacataattcaatttaatcatatgtgtcggaca 14465296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 19230362 - 19230315
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||||| ||||| |||||||||| | |||||||||||||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaattataggtgtcg 19230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 20743332 - 20743286
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    |||||||||||||| ||||| |||||||||||| |||| ||||||||    
T  20743332 ggataataatttgagaaaatgacataattcagtgtaatcataggtgt 20743286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 32910556 - 32910602
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    |||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  32910556 ggataataatttgagaaaatgacataattcagtgtaattatgggtgt 32910602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 40613458 - 40613508
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggacac 82  Q
    ||||| ||||| ||||| |||||||||||| |||||||| |||||||||||    
T  40613458 taatattttgagaaaatcacataattcagtgtaattatatgtgtcggacac 40613508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 54580074 - 54580028
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  54580074 taataatttgaaaaaatcacataattcagtgtaattataagtgtcgg 54580028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 31243600 - 31243555
Alignment:
Q  31 ataataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    |||||||||||| ||||| |||||||||||| |||| |||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtc 31243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 7728012 - 7727964
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    |||||||| |||| ||||| |||| ||||||| ||||||||||||||||    
T  7728012 gataataagttgagaaaatgacatgattcagtataattataggtgtcgg 7727964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 14126162 - 14126118
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||||||| | |||||||||||| |||||||| |||||    
T  14126162 taataatttgataaagtcacataattcagtgtaattataagtgtc 14126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 5468031 - 5467984
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcg 5467984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 28588725 - 28588679
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcgg 28588679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 18586349 - 18586295
Alignment:
Q  22 tcgatatggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||| |||||||||||||| ||||| ||||||| |||| |||||||||||||||    
T  18586349 tcgatacggataataatttga-aaaatgacataatacagtgtaattataggtgtcg 18586295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 18607153 - 18607103
Alignment:
Q  27 atggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||||| ||||| |||||||||| | |||| ||||||||||    
T  18607153 atggataataatttgagaaaataacataattcaatgtaatcataggtgtcg 18607103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 36838551 - 36838597
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| |||||||||||||| ||| |||||||| |||||||    
T  36838551 taataatttgagaaaattacataatttagtgtaattatatgtgtcgg 36838597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 40131629 - 40131667
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  40131629 taataatttgaaaaaatcacataattcagtttaattata 40131667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 23016040 - 23015995
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  23016040 taatcatttgagaaaatcacataattcagtgtaattataggtgtcg 23015995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 2548393 - 2548441
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    |||||||||| || |||||||||||||||||| |||| ||| |||||||    
T  2548393 gataataattagagaaaattacataattcagtgtaatcataagtgtcgg 2548441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 24906354 - 24906306
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||| ||||| |||||||||||| |||||| | |||||||    
T  24906354 gataataatttgaaaaaatgacataattcagtgtaattacaagtgtcgg 24906306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 27932243 - 27932279
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  27932243 taataatttgagaaaattacataattcagtgtaatta 27932279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 43001808 - 43001844
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  43001808 taataatttgaaaaaattacataattcagtgtaatta 43001844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 5938477 - 5938523
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  5938477 ggataataatttgataaaataacataattcagtataattataggtgt 5938523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 15902829 - 15902876
Alignment:
Q  31 ataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    |||||||||||||||||| |||||||| ||| |||||||| |||||||    
T  15902829 ataataatttgataaaatcacataatttagtgtaattatatgtgtcgg 15902876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 18233651 - 18233604
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||| |||||||| ||||| |||||||||||| |||||||||||||||    
T  18233651 gatagtaatttgagaaaatgacataattcagtgtaattataggtgtcg 18233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 30813820 - 30813863
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgt 75  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||    
T  30813820 taataatttgagaaaattacataattcagtgtaattacaggtgt 30813863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 21880160 - 21880206
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| |||||||||||||||||| |||||| | |||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcgg 21880206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 27732290 - 27732244
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||| | |||||||||||||||||| |||||||| |||||||    
T  27732290 taataatttaagaaaattacataattcagtgtaattatatgtgtcgg 27732244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 27945049 - 27945095
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| |||||||||||||||||| |||||| | |||||||    
T  27945049 taataatttgagaaaattacataattcagtgtaattacaagtgtcgg 27945095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 11665491 - 11665446
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  11665491 taataatttgaaaaaatcacataattcagtctaattataagtgtcg 11665446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 18013125 - 18013081
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||| | |||||||||||||||||| |||||||| |||||    
T  18013125 taataatttaaaaaaattacataattcagtgtaattatatgtgtc 18013081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 19930991 - 19930947
Alignment:
Q  33 aataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||||| |||||||||| | |||||||| ||||||    
T  19930991 aataatttgataaaatgacataattcaatgtaattatatgtgtcg 19930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 23751905 - 23751953
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||||||||| | |||||| ||| |||| ||||||||||    
T  23751905 ggataataatttgataaaatgatataatttagtgtaatcataggtgtcg 23751953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 43249998 - 43250046
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||| ||||||| |||| |||||||| ||||||    
T  43249998 ggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 43250046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 7569221 - 7569176
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  7569221 gataataatttgagaaaattacataattcagtgtaattataggtgt 7569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 1532248 - 1532286
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  1532248 taataatttgataaaattacataattcagtgtaattata 1532286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 17341715 - 17341666
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggaca 81  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  17341715 taataatttgataaaatcacataattcagtgtaattataagtgtcagaca 17341666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 12086399 - 12086351
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  12086399 ggataataatttgagataatgacataattcagtttaatcataggtgtcg 12086351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 34446570 - 34446618
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||| |||||||||||| |||| ||||||||||    
T  34446570 ggataataatttgagaaaatgacataattcagtgtaatcataggtgtcg 34446618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 7265644 - 7265598
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  7265644 taataatttgagaaaatcacataattcagtgtaattatatgtgtcgg 7265598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 7977881 - 7977835
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| |||||||||||||||||| |||||| | |||||||    
T  7977881 taataatttgaaaaaattacataattcagtgtaattacaagtgtcgg 7977835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 9025545 - 9025499
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattatatgtgtcgg 9025499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 12235573 - 12235525
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||| || ||||| |||||||||||| |||| ||||||||||    
T  12235573 ggataataattagagaaaatgacataattcagtgtaatcataggtgtcg 12235525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 12696332 - 12696368
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  12696332 taataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 19040360 - 19040404
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||    
T  19040360 taataatttgagaaaatcacataattcagtgtaattatatgtgtc 19040404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 30866195 - 30866147
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggac 80  Q
    ||||||||||| ||||| |||||||||| | |||||||| |||||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggac 30866147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 11927137 - 11927091
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||    
T  11927137 taataatttgataaaatcacataattcagtgtaattatatgtgtcgg 11927091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 3025559 - 3025603
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 30068082 - 30067991
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggt-----gtcggacaccgacgtgagtccgacactatgacacgcctaatc 115  Q
    |||||||||||||| ||||| |||||||||||| ||||  |||||     |||||| ||||||||| ||||||||||  ||||| |||||||    
T  30068082 ggataataatttgagaaaatgacataattcagtataatcgtaggtgccgagtcggataccgacgtgtgtccgacactgggacacacctaatc 30067991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 7658471 - 7658509
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattata 7658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11944673 - 11944719
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| |||||| ||||| |||||||| |||||||    
T  11944673 taataatttgataaaatcacataactcagtgtaattatatgtgtcgg 11944719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 13203649 - 13203687
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  13203649 taataatttgagaaaattacataattcagtgtaattata 13203687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 34897093 - 34897138
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  34897093 taataatttgagaaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 7442853 - 7442889
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  7442853 taataatttcataaaattacataattcagtgtaatta 7442889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 8798882 - 8798830
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggacaccg 84  Q
    ||||||||||| ||||| |||||||||| | |||||||| ||||| |||||||    
T  8798882 taataatttgagaaaataacataattcaatataattatatgtgtccgacaccg 8798830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 27213555 - 27213607
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggacaccg 84  Q
    ||||||||| | ||||| |||||||||| | |||||||| |||||||||||||    
T  27213555 taataatttcagaaaatcacataattcactgtaattatatgtgtcggacaccg 27213607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 44067521 - 44067569
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||| ||||||| |||| |||||||| ||||||    
T  44067521 ggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 44067569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 36878469 - 36878515
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgtcgg 36878515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 398816 - 398772
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||    
T  398816 taataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 22794132 - 22794084
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||||| ||||| ||||||| |||| |||||||||||||||    
T  22794132 ggataataatttgaaaaaatgacataatacagtgtaattataggtgtcg 22794084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 24176420 - 24176373
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||||| ||||| |||| ||||||| |||||||||||||||    
T  24176420 gataataatttgagaaaataacatcattcagtgtaattataggtgtcg 24176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 40747827 - 40747780
Alignment:
Q  29 ggataataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    |||||||||||||| ||||| |||||||||| | ||||||||||||||    
T  40747827 ggataataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 1486760 - 1486714
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcgg 1486714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 1864931 - 1864885
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  1864931 taataatttgagaaaatcacataattcagtgtaattatatgtgtcgg 1864885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 6612222 - 6612176
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| |||||||||||||||||| |||||| | |||||||    
T  6612222 taataatttgaaaaaattacataattcagtgtaattacaagtgtcgg 6612176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 9828052 - 9828098
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| |||||||||||| ||||| || |||||||    
T  9828052 taataatttgataaaatcacataattcagtgtaattttatgtgtcgg 9828098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 28674808 - 28674846
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  28674808 taataatttgagaaaattacataattcagtataattata 28674846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 31015051 - 31015101
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggacac 82  Q
    ||||||||||| ||||| |||||||||||| |||||| | |||||||||||    
T  31015051 taataatttgagaaaatcacataattcagtgtaattacaagtgtcggacac 31015101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 39101234 - 39101188
Alignment:
Q  31 ataataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    |||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattataggtgtcg 39101188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 2851029 - 2851058
Alignment:
Q  32 taataatttgataaaattacataattcagt 61  Q
    ||||||||||||||||||||||||||||||    
T  2851029 taataatttgataaaattacataattcagt 2851058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 8010338 - 8010293
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||| ||||||| |||||||||| |||||||| ||||||    
T  8010338 taataatttgaaaaaattatataattcagtataattataagtgtcg 8010293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 17425146 - 17425101
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    ||||||||||||||||||| |||||||||| | |||||||| ||||    
T  17425146 gataataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 18190159 - 18190114
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcg 77  Q
    ||||||||||| |||||||||||||||||| |||||| | ||||||    
T  18190159 taataatttgaaaaaattacataattcagtgtaattacaagtgtcg 18190114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34298444 - 34298497
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcggacaccga 85  Q
    ||||||||||| ||||| |||||||||||| |||||||| || || ||||||||    
T  34298444 taataatttgagaaaatcacataattcagtgtaattatacgtatccgacaccga 34298497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 7918262 - 7918218
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||    
T  7918262 taataatttgagaaaatcacataattcagtgtaattatatgtgtc 7918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 17754319 - 17754363
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| |||||||||||||||||| ||| |||| |||||    
T  17754319 taataatttgaaaaaattacataattcagtgtaactatatgtgtc 17754363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 44482240 - 44482284
Alignment:
Q  34 ataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||| ||||| |||||||||||| |||||||| |||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcgg 44482284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 34007051 - 34006996
Alignment:
Q  23 cgatatggataataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    |||||| ||||||||||||| ||| | |||||||||||| |||| |||||||||||    
T  34007051 cgatatagataataatttgagaaattgacataattcagtgtaatcataggtgtcgg 34006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 12668474 - 12668428
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  12668474 taataatttgaaaaaatgacataattcagtgtaattataagtgtcgg 12668428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 23921261 - 23921299
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata 70  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  23921261 taataatttgagaaaattacataattcagtgtaattata 23921299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 34691856 - 34691810
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| | |||||||||| |||||||| |||||||    
T  34691856 taataatttgataaaatcatataattcagtgtaattatatgtgtcgg 34691810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 34714268 - 34714222
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||||||||| | |||||||||| |||||||| |||||||    
T  34714268 taataatttgataaaatcatataattcagtgtaattatatgtgtcgg 34714222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 42832327 - 42832281
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||||||||| |||||| |||||||| |||||||    
T  42832327 taataatttgagaaaattacatatttcagtgtaattataagtgtcgg 42832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 28412358 - 28412395
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattat 69  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  28412358 taataatttgataaaatcacataattcagtgtaattat 28412395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 12748687 - 12748735
Alignment:
Q  27 atggataataatttgataaaattacataattcagtttaattataggtgt 75  Q
    |||||||||||||||| ||||| ||||| |||||| |||| ||||||||    
T  12748687 atggataataatttgagaaaatgacatagttcagtgtaatcataggtgt 12748735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 19573984 - 19574028
Alignment:
Q  30 gataataatttgataaaattacataattcagtttaattataggtg 74  Q
    ||||||||||| | ||||| |||||||||||| ||||||||||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtg 19574028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 21374750 - 21374714
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  21374750 taataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 27286343 - 27286299
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||    
T  27286343 taataatttgataagatcacataattaagtgtaattataggtgtc 27286299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 39323272 - 39323308
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  39323272 taataatttgacaaaattacataattcagtgtaatta 39323308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 14538 - 14645
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattata---ggtgtcggacaccgacgtgagtccgacactatgacacgcctaatctaagaaatgtatg 128  Q
    ||||||||||| ||||| |||||||||||| |||||| |   ||||||||||| ||||  | |||||||||   ||||||||||||| ||| | |||| |    
T  14538 taataatttgaaaaaatcacataattcagtgtaattacaagtggtgtcggaca-cgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacg 14636  T
Q  129 tgcttcata 137  Q
    |||||||||    
T  14637 tgcttcata 14645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 70286 - 70332
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcgg 70332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 53189 - 53234
Alignment:
Q  33 aataatttgataaaattacataattcagtttaattataggtgtcgg 78  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgtcgg 53234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 1043 - 1087
Alignment:
Q  32 taataatttgataaaattacataattcagtttaattataggtgtc 76  Q
    ||||||||||| |||||||||||||||||| ||| |||| |||||    
T  1043 taataatttgaaaaaattacataattcagtgtaactatatgtgtc 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 92815 - 92851
Alignment:
Q  32 taataatttgataaaattacataattcagtttaatta 68  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  92815 taataatttgagaaaattacataattcagtgtaatta 92851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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