View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_low_8 (Length: 410)
Name: NF14365_low_8
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 4143113 - 4143492
Alignment:
| Q |
17 |
aagaaggaaaacatacttaggaggcgttttttatatacaacattattaagtgcttatatataactaatctgtacaattgaagaggtaatgccccctaagg |
116 |
Q |
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| T |
4143113 |
aagaaggaaaacatacttaggaggcgttttttatatacaacattattaagtgcttatatataactaatctgtacaattgaagaggtaatgccccctaagg |
4143212 |
T |
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| Q |
117 |
atatataatctatcaatcgcttatatataaatttgaaaacaatttaagacacggttatatgaaggagtttttgaaaattatagttgacatatcataagct |
216 |
Q |
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| T |
4143213 |
atatataatctatcaatcgcttatatataaatttgaaaacaatttaagacacggttatatgaaggagtttttgaaaattatagttgacatatcataagct |
4143312 |
T |
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| Q |
217 |
tttttataggcactttcaaacacttaatcaggtgcttatattagaagctgagttcaaataatttttcaaacatttaagcaggtgcttatgtttattgtaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143313 |
tttttataggcactttcaaacacttaatcaggtgcttatattagaagctgagttcaaataatttttcaaacatttaagcaggtgcttatgtttattgtaa |
4143412 |
T |
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| Q |
317 |
ttattcattaatgtaattagtgttatatatagctaaatgaagacatacaatagctaagataggatagcagtagaataaag |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143413 |
ttattcattaatgtaattagtgttatatatagctaaatgaagacatacaatagctaagataggatagcagtagaataaag |
4143492 |
T |
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